全基因组重测序(BSA-seq)与高分辨率定位相结合揭示了控制花生(Arachis hypogaea L.)种子油积累的基因组区域和候选基因。
Integration of BSA-seq and high-resolution mapping reveals genomic regions and candidate genes controlling seed oil accumulation in peanut (Arachis hypogaea L.).
作者信息
Mo Ziqiang, Qi Feiyan, Sun Ziqi, Qin Li, Wang Juan, Wang Mengmeng, Pavan Stefano, Chen Guoquan, Wang Xiao, Liu Hongfei, Hu Yaojun, Zheng Yuzhen, Zheng Zheng, Zhang Xinyou
机构信息
College of Agronomy, Henan Agricultural University, Zhengzhou, 450046, China.
Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, Zhengzhou, 450002, China.
出版信息
Theor Appl Genet. 2025 Jun 17;138(7):154. doi: 10.1007/s00122-025-04939-3.
Three environmentally stable major QTL controlling seed oil content in peanut were identified, and their genetic effects were evaluated in near‑isogenic lines and a peanut germplasm panel. Increasing seed oil content (SOC) is a primary objective in peanut (Arachis hypogaea L.) breeding, meeting the rising global demand for edible oil. Quantitative trait loci (QTL) mapping can help to identify genes underlying SOC variation and develop markers to enhance selection efficiency by marker-assisted breeding. In the present study, three major and stable QTL for SOC were identified on peanut chromosome Arahy.08, using a bulked segregant analysis (BSA) approach based on whole-genome sequencing of F recombinant inbred lines (RILs). The QTL qSOCA08-1, explaining 11.41-20.97% of phenotypic variation, was mapped on a 0.65-Mb genomic region. The QTL qSOCA08-2, accounting 25.57-39.40% of phenotypic variation, was located on a 1.04-Mb physical interval. Finally, qSOCA08-3 explaining up to 17.31% of the phenotypic variation was mapped in a genomic region of 1.02-Mb. The genetic effects of these three QTL were assessed using near‑isogenic lines (NILs), derived from residual heterozygous individuals, and a tetraploid peanut germplasm panel. Potential candidate genes within the physical intervals of corresponding major QTL were predicted to participate in the oil biosynthesis in peanut. In summary, our study provides valuable genetic resources and tightly linked molecular markers for peanut molecular breeding aimed at improving SOC.
鉴定出了3个控制花生种子油含量且环境稳定的主效QTL,并在近等基因系和花生种质资源群体中评估了它们的遗传效应。提高种子油含量(SOC)是花生(Arachis hypogaea L.)育种的主要目标,以满足全球对食用油不断增长的需求。数量性状位点(QTL)定位有助于鉴定SOC变异的潜在基因,并开发标记以通过标记辅助育种提高选择效率。在本研究中,基于F重组自交系(RIL)的全基因组测序,采用混合分组分析法(BSA),在花生染色体Arahy.08上鉴定出3个控制SOC的主效且稳定的QTL。QTL qSOCA08-1位于一个0.65-Mb的基因组区域,解释了11.41%-20.97%的表型变异。QTL qSOCA08-2位于一个1.04-Mb的物理区间,占表型变异的25.57%-39.40%。最后,qSOCA08-3解释了高达17.31%的表型变异,定位在一个1.02-Mb的基因组区域。利用源自剩余杂合个体的近等基因系(NIL)和四倍体花生种质资源群体评估了这3个QTL的遗传效应。预测了相应主效QTL物理区间内的潜在候选基因参与花生油脂生物合成。总之,本研究为旨在提高SOC的花生分子育种提供了有价值的遗传资源和紧密连锁的分子标记。