Guo Pengyan, Cui Changyan, Quan Baoquan, Zhao Jiping, Ru Jingna, Wang Yanzhen, Song Zhiyuan, Lin Aohui, He Shuwen, Wang Guanghao
Institute of Cash Crops, Shanxi Agricultural University, Fenyang, 032200, People's Republic of China.
Institute of Crop Germplasm Resources (Institute of Biotechnology) Shandong Academy of Agricultural Sciences, Shandong Provincial Key Laboratory of Crop Genetic Improvement, Ecology and Physiology, Jinan, 250100, People's Republic of China.
Genetica. 2025 Jun 19;153(1):23. doi: 10.1007/s10709-025-00239-2.
C2H2-type zinc finger proteins (ZFPs) are crucial transcription factors in eukaryotes, playing significant roles in various biological processe. The Q-type ZFP, a plant-specific subfamily, are particularly important in responding to abiotic stresses. Wheat is a crucial staple crop in world, with drought significantly affecting its yield and quality. Developing drought-resistant varieties is one of the most cost-effective strategies to mitigate drought stress in wheat. Here, we identified 772 non-redundant members of the Q-type ZFP genes family in Triticeae. Among them, 267 genes were found in common wheat, 56 in wild emmer wheat, 157 in spelt wheat, 154 in durum wheat, 56 in Triticum urart, and 82 in Aegilops tauschii. The phylogenetic tree shows that the Q-type ZFP genes family can be divided into five groups. The Q-type ZFPs family are mainly regulated by MYB, MYC, and WRKY transcription factors. Moreover, there are a large number of drought stress and ABA-related cis-acting elements in the promoter region. We studied their gene structures and found that most genes have a single exon. In this study, we identified 76 tandemly duplicated gene pairs across the six species. A total of 3,445 collinear gene pairs were found, with 1,877 pairs in wheat. Furthermore, most collinear gene pairs have Ka/Ks values less than 1. Comparative analysis of multiple physiological indices, including relative coleoptile length and CAT activity, revealed that common wheat cultivars JM6425 and JM4293 exhibited stronger drought tolerance compared to JM4258 and JM5787. TaZFP3D-12 and TaZFP5D-22 exhibited similar expression patterns in drought-tolerant varieties, contrasting with those in drought-sensitive ones.
C2H2型锌指蛋白(ZFPs)是真核生物中至关重要的转录因子,在各种生物学过程中发挥着重要作用。Q型锌指蛋白是植物特有的亚家族,在应对非生物胁迫方面尤为重要。小麦是世界上重要的主粮作物,干旱严重影响其产量和品质。培育抗旱品种是减轻小麦干旱胁迫最具成本效益的策略之一。在此,我们在小麦族中鉴定出772个非冗余的Q型锌指蛋白基因家族成员。其中,普通小麦中有267个基因,野生二粒小麦中有56个,斯卑尔脱小麦中有157个,硬粒小麦中有154个,乌拉尔图小麦中有56个,节节麦中有82个。系统发育树表明,Q型锌指蛋白基因家族可分为五组。Q型锌指蛋白家族主要受MYB、MYC和WRKY转录因子调控。此外,启动子区域存在大量与干旱胁迫和脱落酸相关的顺式作用元件。我们研究了它们的基因结构,发现大多数基因有一个单一外显子。在本研究中,我们在这六个物种中鉴定出76个串联重复基因对。共发现3445个共线基因对,其中小麦中有1877对。此外,大多数共线基因对的Ka/Ks值小于1。对包括相对胚芽鞘长度和CAT活性在内的多个生理指标的比较分析表明,普通小麦品种JM6425和JM4293比JM4258和JM5787表现出更强的耐旱性。TaZFP3D - 12和TaZFP5D - 22在耐旱品种中表现出相似的表达模式,与干旱敏感品种形成对比。