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新种,一种从根瘤中分离出的新型根瘤菌物种。

sp. nov., a novel rhizobial species isolated from nodules.

作者信息

Hsouna Jihed, Zouagui Houda, Gritli Takwa, Ilahi Houda, Han Jia-Cheng, Sulman Muhammad, Ellouze Walid, Zhang Xiao Xia, Mansouri Maroua, Missbah El Idrissi Mustapha, Alami Soufiane, Courty Pierre Emmanuel, Wipf Daniel, Bekki Abdelkader, Tambong James T, Mnasri Bacem

机构信息

Laboratory of Legumes and Sustainable Agroecosystems, Centre of Biotechnology of Borj-Cédria, BP 901, Hammam-Lif 2050, Tunisia.

Present address: University of Carthage, Faculty of Sciences of Bizerte, Bizerte, 7021, Zarzouna, Tunisia.

出版信息

Int J Syst Evol Microbiol. 2025 Jun;75(6). doi: 10.1099/ijsem.0.006807.

Abstract

Three slow-growing rhizobial strains, designated as 1AS2L, 1AS20L and 1AS5L, were isolated from nodules of in Borj Cedria, northern Tunisia. These strains, which belong to the symbiovar cyanophyllae, were characterized using a polyphasic approach. Phylogenetic analysis of the 16S rRNA () gene placed these strains within the genus , specifically in the superclade associated with . Further phylogenetic analysis using concatenated sequences of the A, D, II and B genes (totalling 1,734 bp) positioned the strains in a distinct lineage, with identified as their closest related species, sharing a sequence identity of 95.2%. The type strain, 1AS2L, exhibited average nucleotide identity values of 89.10%, 89.08% and 89.00% with the type strains of the closest valid species: , and , respectively. Additionally, digital DNA-DNA hybridization values confirmed the novelty of strain 1AS2L, showing low similarity (38.0%-38.3%) with the type strains of the closest known species. Phylogenomic analyses based on up-to-date bacterial core genes, Type (Strain) Genome Server and the Genome Taxonomy Database (GTDB) pipelines further supported the uniqueness of the 1AS2L, 1AS20L and 1AS5L strains. The GTDB analysis also robustly clustered two strains (SZCCT0449 and NSD-1) with our strains, suggesting putative members of the proposed novel species. The differentiation of these novel strains from their closest phylogenetic neighbours was also corroborated by phenotypic, physiological and fatty acid content analyses. Based on genomic, phenotypic and biochemical data, we propose the establishment of a novel species, sp. nov., with strain 1AS2L (=LMG 33170=DSM 114401) as the type strain.

摘要

从突尼斯北部博尔杰·塞德里亚的[植物名称缺失]根瘤中分离出三株生长缓慢的根瘤菌菌株,分别命名为1AS2L、1AS20L和1AS5L。这些属于共生变种蓝叶藻的菌株采用多相方法进行了表征。对16S rRNA()基因的系统发育分析将这些菌株置于根瘤菌属内,具体位于与[相关物种名称缺失]相关的超级分支中。使用A、D、II和B基因的串联序列(共1734 bp)进行的进一步系统发育分析将这些菌株置于一个独特的谱系中,确定[最近相关物种名称缺失]为它们最密切相关的物种,序列同一性为95.2%。模式菌株1AS2L与最接近的有效物种的模式菌株:[物种名称1缺失]、[物种名称2缺失]和[物种名称3缺失]的平均核苷酸同一性值分别为89.10%、89.08%和89.00%。此外,数字DNA-DNA杂交值证实了菌株1AS2L的新颖性,与最接近的已知物种的模式菌株显示出低相似性(38.0%-38.3%)。基于最新细菌核心基因、类型(菌株)基因组服务器和基因组分类数据库(GTDB)管道的系统基因组分析进一步支持了1AS2L、1AS20L和1AS5L菌株的独特性。GTDB分析还将两株菌株(SZCCT0449和NSD-1)与我们的菌株紧密聚类,表明它们可能是所提议新物种的成员。这些新菌株与其最密切的系统发育邻居的差异也通过表型、生理和脂肪酸含量分析得到了证实。基于基因组、表型和生化数据,我们提议建立一个新物种,[新物种名称缺失] sp. nov.,以菌株1AS2L(=LMG 33170=DSM 114401)作为模式菌株。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7041/12179390/bb4f3f2664a3/ijsem-75-06807-g001.jpg

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