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通过哈密顿量插值进行的通用量子炼金术自由能模拟

General Quantum Alchemical Free Energy Simulations via Hamiltonian Interpolation.

作者信息

Li Chenghan, Zhang Xing, Chan Garnet Kin-Lic

机构信息

Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, United States.

出版信息

J Chem Theory Comput. 2025 Jul 8;21(13):6644-6652. doi: 10.1021/acs.jctc.5c00682. Epub 2025 Jun 20.

Abstract

We present an implementation of alchemical free energy simulations at the quantum mechanical level by directly interpolating the electronic Hamiltonian. The method is compatible with any level of electronic structure theory and requires only one quantum calculation for each molecular dynamics step in contrast to multiple energy evaluations that would be needed when interpolating the ground-state energies. We demonstrate the correctness and applicability of the technique by computing alchemical free energy changes of gas-phase molecules, with both nuclear and electron creation/annihilation. We also show an initial application to first-principles p calculation for solvated molecules where we quantum mechanically annihilate a bonded proton.

摘要

我们通过直接对电子哈密顿量进行插值,展示了量子力学层面炼金术自由能模拟的一种实现方法。该方法与任何电子结构理论水平都兼容,并且与在插值基态能量时需要多次能量评估不同,每个分子动力学步骤仅需一次量子计算。我们通过计算具有核和电子产生/湮灭的气相分子的炼金术自由能变化,证明了该技术的正确性和适用性。我们还展示了其在溶剂化分子的第一性原理计算中的初步应用,其中我们用量子力学方法消除了一个键合质子。

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