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将[物种名称1]、[物种名称2]和[物种名称3]重新分类到[属名]属,并在[科名]科内提议设立一个新属,即[新属名]属,新属,新组合,以容纳不同的物种[物种名称4]。

Reclassification of , and , into the genus , and proposal of a new genus within the family , gen. nov., comb. nov., to accommodate the divergent species .

作者信息

Sbissi Imed, Kammoun Ikram, El May Haifa, Bouzidi Tesnim, Ghodhbane-Gtari Faten, Gtari Maher

机构信息

Department of Biological and Chemical Engineering, USCR Molecular Bacteriology and Genomics, University of Carthage, National Institute of Applied Sciences and Technology, Tunis Cedex, Tunisia.

LR Pastoral Ecosystems and Promotion of Spontaneous Plants and Associated Microorganisms, Institute of Arid Lands of Medenine, University of Gabes, Medenine, Tunisia.

出版信息

Int J Syst Evol Microbiol. 2025 Jun;75(6). doi: 10.1099/ijsem.0.006820.

Abstract

The genus (, ) comprises a diverse group of bacteria inhabiting human and animal mucosa, as well as environmental niches such as water, soil and food. While some species are clinically significant pathogens, others play ecological or biotechnological roles. Despite previous taxonomic revisions, remains polyphyletic, necessitating a refined classification. In this study, we conducted comprehensive taxogenomic analyses integrating core protein phylogeny, average amino acid identity and the percentage of conserved proteins, along with 16S rRNA similarities and inferred phylogeny. Our results revealed three distinct phylogenetic clusters within . The core group, comprising NBRC 102154 and closely related species, exhibited strong genomic cohesion. A second cluster, consisting of DSM 14165, CCUG 350 and NBRC 14588, showed greater genetic affinity to GVCNT2, supporting their reassignment to the genus . The third group, represented by CCUG 9405, was phylogenetically distinct, occupying a basal position relative to , indicating the need for its classification within a novel genus within the family , for which we propose the name gen. nov., comb. nov. Phenotypic data compiled from the original published descriptions of the respective species, including fatty acid composition and enzymatic profiles, further corroborated these genomic findings. This study refines taxonomy by clarifying genus boundaries and evolutionary relationships, with implications for ecology and clinical microbiology.

摘要

[具体细菌属名]属([拉丁属名],[拉丁属名])包含一群多样的细菌,它们栖息于人类和动物的黏膜,以及水、土壤和食物等环境生态位。虽然一些物种是具有临床意义的病原体,但其他物种发挥着生态或生物技术作用。尽管此前进行了分类学修订,但[具体细菌属名]仍为多系群,需要进行细化分类。在本研究中,我们进行了全面的分类基因组分析,整合了核心蛋白系统发育、平均氨基酸同一性和保守蛋白百分比,以及16S rRNA相似性和推断的系统发育。我们的结果揭示了[具体细菌属名]内三个不同的系统发育簇。核心组包括[具体细菌种名] NBRC 102154及密切相关的物种,表现出很强的基因组凝聚力。第二个簇由[具体细菌种名] DSM 14165、[具体细菌种名] CCUG 350和[具体细菌种名] NBRC 14588组成,与[具体细菌种名] GVCNT2显示出更大的遗传亲和力,支持将它们重新分类到[具体细菌属名]属。第三组以[具体细菌种名] CCUG 9405为代表,在系统发育上是独特的,相对于[具体细菌属名]占据基部位置,这表明需要将其分类到[具体细菌科名]科内的一个新属中,我们为此提议命名为[新属名]属,新组合。从各个物种的原始发表描述中汇编的表型数据,包括脂肪酸组成和酶谱,进一步证实了这些基因组研究结果。本研究通过明确属的界限和进化关系,完善了[具体细菌属名]的分类学,对生态学和临床微生物学具有重要意义。

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