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使用NP-PRESS从红树林链霉菌中高效挖掘天然产物

Efficient mining of natural products from Mangrove streptomyces using NP-PRESS.

作者信息

Yu Lin, Wang Junxiao, Jin Kai, Xu Fan, Huang Yi, Zhang Ran, Wu Yihan, Xu Fei

机构信息

Department of Chemical and Environmental Engineering, Shanghai University, Shanghai, 200433, China.

School of Medicine, Shanghai University, Shanghai, 200433, China.

出版信息

Arch Microbiol. 2025 Jun 21;207(8):182. doi: 10.1007/s00203-025-04380-6.

Abstract

Streptomyces-derived natural products are an important source of lead compounds for drug discovery. Traditional methods for mining these compounds are costly, time-consuming, and labor-intensive. To address these challenges, we applied NP-PRESS, a two-stage metabolome refining pipeline, to Streptomyces speibonae W307, isolated from a mangrove environment. We conducted a thorough analysis of molecular features using NP-PRESS, leading to the identification of three natural products named strepyrazinones A, B, and C, two of which possess new structures. These compounds were characterized using high-resolution MS and NMR, with their configurations determined through ECD calculations. Additionally, we proposed their corresponding biosynthetic gene cluster and putative biosynthetic pathways.

摘要

链霉菌属来源的天然产物是药物研发中先导化合物的重要来源。挖掘这些化合物的传统方法成本高、耗时且劳动强度大。为应对这些挑战,我们将NP - PRESS(一种两阶段代谢组精炼流程)应用于从红树林环境中分离出的斯氏链霉菌W307。我们使用NP - PRESS对分子特征进行了全面分析,从而鉴定出三种名为链吡嗪酮A、B和C的天然产物,其中两种具有新结构。这些化合物通过高分辨率质谱和核磁共振进行了表征,并通过电子圆二色光谱(ECD)计算确定了它们的构型。此外,我们还提出了它们相应的生物合成基因簇和推测的生物合成途径。

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