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开源心脏磁共振指纹识别

Open-source cardiac magnetic resonance fingerprinting.

作者信息

Schuenke Patrick, Redshaw Kranich Catarina, Lutz Max, Schattenfroh Jakob, Anders Matthias, Reisdorf Philine, Schulz-Menger Jeanette, Sack Ingolf, Hamilton Jesse, Seiberlich Nicole, Kolbitsch Christoph

机构信息

Physikalisch-Technische Bundesanstalt (PTB), Braunschweig and Berlin, Germany.

Department of Radiology, Charité-Universitätsmedizin Berlin, Berlin, Germany.

出版信息

MAGMA. 2025 Jun 21. doi: 10.1007/s10334-025-01269-9.

Abstract

PURPOSE

Cardiac magnetic resonance fingerprinting (cMRF) is a powerful quantitative imaging technique that provides multi-parametric diagnostic information. Here, we introduce an open-source framework for cardiac MRF including open-source pulse sequences, image reconstruction, and parameter estimation tools that are needed for the processing of the data.

METHODS

A 2D cMRF sequence with a variable-density spiral readout is implemented using the open-source and vendor-agnostic sequence format Pulseq. Cardiac triggering is used to synchronize acquisition with the rest period of the heart. inversion and preparation pulses are added to ensure accurate parameter estimation. Data acquisition is carried out over 15 heartbeats. The images showing the signal changes over time are reconstructed and matched to a pre-calculated signal dictionary. In addition to the cMRF sequence, spin-echo reference sequences for quality control in phantoms are provided. The method is evaluated in phantom experiments using a T1MES phantom on four different scanners. In vivo experiments were performed to compare the open-source cMRF sequence with a vendor-specific cMRF sequence and clinical sequences used for and mapping of the heart. Three volunteers were imaged on two different scanners.

RESULTS

The error of and over all tissue types present in the T1MES phantom was comparable between all four scanners and on average 4.50 ± 2.48%. and maps obtained in vivo were comparable between the open-source and vendor-specific implementation of cMRF.

CONCLUSION

The proposed open-source cMRF implementation enables accurate parameter estimation across multiple different scanners. Sequence files, image reconstruction, and parameter estimation scripts are available for reproducible quantitative MRI.

摘要

目的

心脏磁共振指纹成像(cMRF)是一种强大的定量成像技术,可提供多参数诊断信息。在此,我们介绍一个用于心脏MRF的开源框架,包括处理数据所需的开源脉冲序列、图像重建和参数估计工具。

方法

使用开源且与供应商无关的序列格式Pulseq实现具有可变密度螺旋读出的二维cMRF序列。心脏触发用于使采集与心脏的静息期同步。添加反转和准备脉冲以确保准确的参数估计。在15个心跳周期内进行数据采集。重建显示随时间变化的信号的图像,并将其与预先计算的信号字典进行匹配。除了cMRF序列外,还提供用于体模质量控制的自旋回波参考序列。该方法在使用T1MES体模的四个不同扫描仪上进行体模实验中进行评估。进行体内实验以比较开源cMRF序列与供应商特定的cMRF序列以及用于心脏T1和T2映射的临床序列。在两个不同的扫描仪上对三名志愿者进行成像。

结果

在T1MES体模中存在的所有组织类型上,T1和T2的误差在所有四个扫描仪之间相当,平均为4.50±2.48%。在体内获得的T1和T2图在cMRF的开源和供应商特定实现之间具有可比性。

结论

所提出的开源cMRF实现能够在多个不同扫描仪上进行准确的参数估计。序列文件、图像重建和参数估计脚本可用于可重复的定量MRI。

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