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基于计算机模拟研究四唑和恶二唑化合物作为登革病毒NS5蛋白抑制剂:合成、密度泛函理论、药物代谢动力学及分子对接分析

In silico investigation of tetrazole and oxadiazole compounds as inhibitors of the dengue virus NS5 protein: Synthesis, DFT, ADME and molecular docking analysis.

作者信息

Demirci Tuna, Badreddin Musatat Ahmad, Kaya Mustafa Oğuzhan, Arslan Mustafa

机构信息

Scientific and Technological Research Laboratory, Düzce University, Düzce, Türkiye.

Chemistry, Faculty of Sciences, Sakarya University, Sakarya, Türkiye.

出版信息

Chem Biol Interact. 2025 Sep 5;418:111608. doi: 10.1016/j.cbi.2025.111608. Epub 2025 Jun 19.

DOI:10.1016/j.cbi.2025.111608
PMID:40543643
Abstract

This study investigates the therapeutic potential of novel tetrazole and oxadiazole derivatives targeting the Dengue virus NS5 protein through an integrated computational and experimental approach. A series of nitrile-substituted 1,4-dihydropyridine (1,4DHPs) derivatives were synthesized and converted into tetrazole and 1,3,4-oxadiazole analogs using established protocols. Structural characterization was performed via NMR, FT-IR, and elemental analysis. Molecular docking studies against the NS5 protein (PDB ID: 6KR2) revealed superior binding affinities for several compounds (ΔG = -7.18 to -9.58 kcal/mol), with compound 5 exhibiting the strongest interaction (ΔG = -9.58 kcal/mol, theoretical IC = 94.64 nM), outperforming the reference ligand SAH (ΔG = -7.18 kcal/mol). ADME profiling demonstrated favorable drug-likeness, acceptable solubility, blood-brain barrier penetration, and CYP450 metabolic stability. DFT analyses elucidated electronic properties, including HOMO-LUMO gaps (2.72-4.80 eV) and electrophilicity indices (13.5-23.6 eV), correlating with observed bioactivity. Toxicity predictions identified compound-specific liabilities requiring optimization. These findings highlight the promise of tetrazole-oxadiazole hybrids as potent NS5 inhibitors, warranting further preclinical validation for Dengue therapeutic development.

摘要

本研究通过综合计算和实验方法,研究了靶向登革病毒NS5蛋白的新型四唑和恶二唑衍生物的治疗潜力。合成了一系列腈基取代的1,4-二氢吡啶(1,4DHPs)衍生物,并使用既定方案将其转化为四唑和1,3,4-恶二唑类似物。通过核磁共振(NMR)、傅里叶变换红外光谱(FT-IR)和元素分析进行结构表征。针对NS5蛋白(PDB ID:6KR2)的分子对接研究表明,几种化合物具有优异的结合亲和力(ΔG = -7.18至-9.58 kcal/mol),化合物5表现出最强的相互作用(ΔG = -9.58 kcal/mol,理论IC = 94.64 nM),优于参考配体SAH(ΔG = -7.18 kcal/mol)。药物代谢动力学(ADME)分析表明其具有良好的类药性、可接受的溶解度、血脑屏障通透性和细胞色素P450代谢稳定性。密度泛函理论(DFT)分析阐明了电子性质,包括最高占据分子轨道-最低未占据分子轨道能隙(2.72 - 4.80 eV)和亲电性指数(13.5 - 23.6 eV),与观察到的生物活性相关。毒性预测确定了需要优化的化合物特异性问题。这些发现突出了四唑-恶二唑杂化物作为有效的NS5抑制剂的前景,为登革热治疗开发的进一步临床前验证提供了依据。

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