Gutmann Theresia, Kuster David, Hyman Anthony A
Max Planck Institute of Cell Biology and Genetics, Dresden 01307, Germany.
Proc Natl Acad Sci U S A. 2025 Jul;122(26):e2426204122. doi: 10.1073/pnas.2426204122. Epub 2025 Jun 23.
A hallmark of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection is the delayed interferon response. Interferons are typically produced upon host recognition of pathogen- or damage-associated molecular patterns, such as nucleic acids. While the mechanisms by which SARS-CoV-2 evades host recognition of its RNA are well studied, how it evades immune responses to cytosolic DNA-leaked from mitochondria or nuclei during infection-remains poorly understood. Here, we demonstrate that the SARS-CoV-2 nucleocapsid protein directly suppresses DNA sensing by cyclic guanosine monophosphate-adenosine monophosphate synthase (cGAS). Although primarily known for packaging the viral RNA genome, we uncover that the SARS-CoV-2 nucleocapsid protein also binds DNA with high affinity and competitively blocks cGAS activation. Using cell-free biochemical and biophysical approaches, including single-molecule optical tweezers, we show that the nucleocapsid protein binds to DNA at nanomolar concentrations and cocondenses with DNA at micromolar concentrations, thereby impeding stable cGAS-DNA interactions required for signal propagation. Hyperphosphorylation of the nucleocapsid protein diminishes its competitive binding capacity. Our findings reveal an unexpected role of the SARS-CoV-2 nucleocapsid protein in directly suppressing the cGAS-STING pathway, strongly suggesting that this contributes to the delayed interferon response during infection. This study raises the possibility that nucleocapsid proteins of other RNA viruses may also exhibit moonlighting functions by antagonizing host nucleic acid-sensing pathways.
严重急性呼吸综合征冠状病毒2(SARS-CoV-2)感染的一个标志是干扰素反应延迟。干扰素通常在宿主识别病原体或损伤相关分子模式(如核酸)后产生。虽然SARS-CoV-2逃避宿主对其RNA识别的机制已得到充分研究,但在感染过程中它如何逃避对从线粒体或细胞核泄漏的胞质DNA的免疫反应仍知之甚少。在这里,我们证明SARS-CoV-2核衣壳蛋白直接抑制环状鸟苷单磷酸-腺苷单磷酸合酶(cGAS)对DNA的感应。尽管SARS-CoV-2核衣壳蛋白主要以包装病毒RNA基因组而闻名,但我们发现它也能以高亲和力结合DNA并竞争性地阻断cGAS的激活。使用包括单分子光镊在内的无细胞生化和生物物理方法,我们表明核衣壳蛋白以纳摩尔浓度结合DNA,并以微摩尔浓度与DNA共凝聚,从而阻碍信号传播所需的稳定cGAS-DNA相互作用。核衣壳蛋白的过度磷酸化会降低其竞争性结合能力。我们的研究结果揭示了SARS-CoV-2核衣壳蛋白在直接抑制cGAS-STING途径中的意外作用,强烈表明这有助于感染期间的干扰素反应延迟。这项研究提出了其他RNA病毒的核衣壳蛋白也可能通过拮抗宿主核酸感应途径发挥兼职功能的可能性。