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转录组分析揭示了黑醋栗果实发育过程中抗坏血酸(AsA)和类黄酮合成及代谢过程的调控机制。

Transcriptome profiling reveals the regulatory mechanisms of AsA (ascorbic acid) and flavonoid synthesis and metabolic processes in fruit development of Ribes nigrum L.

作者信息

Zhang Xuelin, Zhang Danni, Li Weihua, Li Jiachen, Li Shuxian, Zhang Weixia, Zhang Peng, Cui Kaojia, Huo Junwei, Gang Huixin, Qin Dong

机构信息

College of Horticulture & Landscape Architecture, Northeast Agricultural University, Harbin, 150030, China.

National-Local Joint Engineering Research Center for Development and Utilization of Small Fruits in Cold Regions, National Development and Reform Commission, 150030, Harbin, China.

出版信息

Mol Genet Genomics. 2025 Jun 23;300(1):62. doi: 10.1007/s00438-025-02267-1.


DOI:10.1007/s00438-025-02267-1
PMID:40551031
Abstract

Blackcurrant (Ribes nigrum L.), a nutrient-rich cold-climate berry, accumulates ascorbic acid (AsA) and flavonoids critical for fruit quality, yet their regulatory mechanisms during development remain poorly characterized. This study systematically investigated AsA and flavonoid dynamics across four developmental stages (young, expansion, veraison, ripe) in two contrasting varieties, 'Adelinia' and 'Heifeng', while integrating transcriptomics to elucidate metabolic pathways and regulatory networks. We observed a progressive decline in AsA content during fruit maturation, governed by coordinated regulation of biosynthesis (GDP-L-galactose phosphorylase-driven) and recycling pathways (mediated by monodehydroascorbate reductase). Flavonoid levels peaked at the young fruit stage, sharply decreased during veraison, and showed varietal specificity, with 'Heifeng' exhibiting higher accumulation. Co-expression networks identified 4 core structural genes and 6 transcription factors (TFs) regulating AsA metabolism, alongside 8 structural genes and 9 TFs associated with flavonoid biosynthesis. Comparative analysis of fruit size revealed divergent hormone signaling between varieties, with auxin- and cytokinin-related DEGs in the plant hormone transduction pathway (ko04075) strongly correlated with cell expansion. Photosynthesis-antenna protein pathway genes (ko00196) further contributed to size variation, suggesting energy allocation trade-offs during ripening. These findings advance the molecular understanding of AsA and flavonoid regulation in blackcurrant, highlighting cultivar-specific metabolic strategies. The identified genes and TFs provide actionable targets for breeding programs aimed at enhancing nutritional quality and yield, while insights into hormone signaling offer practical frameworks for optimizing growth regulator applications in cultivation.

摘要

黑加仑(Ribes nigrum L.)是一种营养丰富的适应寒冷气候的浆果,积累了对果实品质至关重要的抗坏血酸(AsA)和类黄酮,但其发育过程中的调控机制仍不清楚。本研究系统地研究了两个对比品种‘Adelinia’和‘Heifeng’在四个发育阶段(幼果期、膨大期、转色期、成熟期)的AsA和类黄酮动态变化,同时整合转录组学以阐明代谢途径和调控网络。我们观察到果实成熟过程中AsA含量逐渐下降,这受生物合成(由GDP-L-半乳糖磷酸化酶驱动)和循环途径(由单脱氢抗坏血酸还原酶介导)的协同调控。类黄酮水平在幼果期达到峰值,在转色期急剧下降,并表现出品种特异性,‘Heifeng’积累量更高。共表达网络鉴定出4个调控AsA代谢的核心结构基因和6个转录因子(TFs),以及8个与类黄酮生物合成相关的结构基因和9个TFs。果实大小的比较分析揭示了品种间不同的激素信号传导,植物激素转导途径(ko04075)中与生长素和细胞分裂素相关的差异表达基因与细胞膨大密切相关。光合作用-天线蛋白途径基因(ko00196)进一步导致了大小差异,表明成熟过程中存在能量分配权衡。这些发现推进了对黑加仑中AsA和类黄酮调控的分子理解,突出了品种特异性的代谢策略。所鉴定的基因和TFs为旨在提高营养品质和产量的育种计划提供了可操作的靶点,而对激素信号传导的深入了解为优化栽培中生长调节剂的应用提供了实用框架。

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[1]
Transcriptome profiling reveals the regulatory mechanisms of AsA (ascorbic acid) and flavonoid synthesis and metabolic processes in fruit development of Ribes nigrum L.

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本文引用的文献

[1]
A comprehensive metabolic map reveals major quality regulations in red-flesh kiwifruit (Actinidia chinensis).

New Phytol. 2023-6

[2]
A transcriptional complex of FtMYB102 and FtbHLH4 coordinately regulates the accumulation of rutin in Fagopyrum tataricum.

Plant Physiol Biochem. 2023-1

[3]
A molecular framework of ethylene-mediated fruit growth and ripening processes in tomato.

Plant Cell. 2022-8-25

[4]
F-box protein MdAMR1L1 regulates ascorbate biosynthesis in apple by modulating GDP-mannose pyrophosphorylase.

Plant Physiol. 2022-1-20

[5]
The Apple Module Enhances Drought Stress Tolerance by Integrating Ascorbic Acid Metabolism.

Plant Physiol. 2020-9

[6]
CsMYB60 directly and indirectly activates structural genes to promote the biosynthesis of flavonols and proanthocyanidins in cucumber.

Hortic Res. 2020-7-1

[7]
Blackcurrant (Ribes nigrum) Prevents Obesity-Induced Nonalcoholic Steatohepatitis in Mice.

Obesity (Silver Spring). 2019-1

[8]
Integrated analysis of transcriptomic and metabolomic data reveals critical metabolic pathways involved in rotenoid biosynthesis in the medicinal plant Mirabilis himalaica.

Mol Genet Genomics. 2017-12-28

[9]
Blackcurrant anthocyanins stimulated cholesterol transport via post-transcriptional induction of LDL receptor in Caco-2 cells.

Eur J Nutr. 2017-7-17

[10]
Increasing ascorbate levels in crops to enhance human nutrition and plant abiotic stress tolerance.

Curr Opin Biotechnol. 2017-2-21

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