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对四个河南家蚕品系产茧性状的全基因组关联研究揭示了新的候选基因。

Genome-wide association study of cocoon-producing traits in four Henan silkworm strains revealed new candidate genes.

作者信息

Song Xingya, Lyu Yingxian, Zhang Yuqiao, Ding Wenjia, Huang Yongzhen, Yang Shang

机构信息

Henan Academy of Sericulture Science, Zhengzhou, Henan, China.

College of Animal Science and Technology, Northwest Agriculture and Forestry University, Yangling, Shaanxi, China.

出版信息

Front Genet. 2025 Jun 10;16:1580806. doi: 10.3389/fgene.2025.1580806. eCollection 2025.

DOI:10.3389/fgene.2025.1580806
PMID:40557284
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12185488/
Abstract

BACKGROUND

The silkworm (), has been farmed in China for over 5,000 years, and holds significant economic value. Recent genomic advances have deepened our understanding of silk production mechanisms, enabling the development of improved silkworm breeds. Further research is needed to identify effective molecular markers linked to silk production traits, as this will enhance genetic improvement efforts.

RESULTS

In the genome-wide association analysis study, we identified 40 significant single nucleotide polymorphisms (SNPs) and 28 candidate genes which were related to cocoon shell weight, cocoon width and whole cocoon weight in four silkworm strains in Henan. Through linkage imbalance block analysis, we found that the (ATPase inhibitor-like protein) and (OTU domain-containing protein 7B) were strongly selected. By using online databases, we found that the gene was highly expressed in the posterior silk glands and may play an important role in the process of silk production.

CONCLUSION

The candidate genes in this study may affect the production and health traits of silkworms, and may provide an important reference for silkworm breeding.

摘要

背景

家蚕在中国已养殖了5000多年,具有重要的经济价值。最近的基因组进展加深了我们对蚕丝生产机制的理解,有助于培育改良家蚕品种。需要进一步研究以鉴定与蚕丝生产性状相关的有效分子标记,因为这将加强遗传改良工作。

结果

在全基因组关联分析研究中,我们在河南的四个家蚕品系中鉴定出40个与茧层重量、茧宽和全茧重量相关的显著单核苷酸多态性(SNP)和28个候选基因。通过连锁不平衡块分析,我们发现(ATP酶抑制剂样蛋白)和(含OTU结构域蛋白7B)受到强烈选择。通过使用在线数据库,我们发现该基因在后丝腺中高度表达,可能在蚕丝生产过程中起重要作用。

结论

本研究中的候选基因可能影响家蚕的生产和健康性状,可能为家蚕育种提供重要参考。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d11/12185488/1c5283cac3a3/fgene-16-1580806-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d11/12185488/c74235af0a74/fgene-16-1580806-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d11/12185488/5df046a97884/fgene-16-1580806-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d11/12185488/4bfebb7fe6a3/fgene-16-1580806-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d11/12185488/abd89b1b4471/fgene-16-1580806-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d11/12185488/2ace4268d430/fgene-16-1580806-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d11/12185488/1c5283cac3a3/fgene-16-1580806-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d11/12185488/c74235af0a74/fgene-16-1580806-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d11/12185488/5df046a97884/fgene-16-1580806-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d11/12185488/4bfebb7fe6a3/fgene-16-1580806-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d11/12185488/abd89b1b4471/fgene-16-1580806-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d11/12185488/2ace4268d430/fgene-16-1580806-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d11/12185488/1c5283cac3a3/fgene-16-1580806-g006.jpg

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本文引用的文献

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SilkMeta: a comprehensive platform for sharing and exploiting pan-genomic and multi-omic silkworm data.丝科元:一个用于共享和利用全基因组和多组学家蚕数据的综合平台。
Nucleic Acids Res. 2024 Jan 5;52(D1):D1024-D1032. doi: 10.1093/nar/gkad956.
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Deciphering the Genetic Basis of Silkworm Cocoon Colors Provides New Insights into Biological Coloration and Phenotypic Diversification.破译家蚕茧色的遗传基础为生物着色和表型多样化提供了新的见解。
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高分辨率家蚕泛基因组为人工选择和生态适应提供了遗传见解。
Nat Commun. 2022 Sep 24;13(1):5619. doi: 10.1038/s41467-022-33366-x.
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OTUD7B stabilizes estrogen receptor α and promotes breast cancer cell proliferation.OTUD7B 稳定雌激素受体 α 并促进乳腺癌细胞增殖。
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LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on variant call format files.LDBlockShow:一种基于变体调用格式文件快速方便地可视化连锁不平衡和单倍型块的工具。
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