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骨肉瘤中的染色体混乱

Chromoanagenesis in Osteosarcoma.

作者信息

Li Guozhuang, Wu Nan, Ghabrial Jen, Stinnett Victoria, Klausner Melanie, Morsberger Laura, Long Patty, Baraban Ezra, Gross John M, Zou Ying S

机构信息

State Key Laboratory of Complex Severe and Rare Diseases, Department of Orthopedic Surgery, Peking Union Medical College Hospital, Peking Union Medical College and Chinese Academy of Medical Sciences, Beijing 100730, China.

Beijing Key Laboratory of Big Data Innovation and Application for Skeletal Health Medical Care, Beijing 100730, China.

出版信息

Biomolecules. 2025 Jun 7;15(6):833. doi: 10.3390/biom15060833.

DOI:10.3390/biom15060833
PMID:40563473
Abstract

Chromoanagenesis is a catastrophic genomic phenomenon involving sudden, extensive rearrangements within one or a few cell cycles. In osteosarcoma, the most prevalent malignant bone tumor in children and adolescents, these events dramatically alter the genomic landscape, frequently disrupting key tumor suppressor genes like and , amplifying oncogene expression, and propelling tumor progression and evolution. This review elucidates how key chromoanagenic mechanisms, such as chromothripsis and chromoanasynthesis, arise from replication stress and impaired DNA repair pathways, ultimately contributing to genomic instability in osteosarcoma. Chromothripsis features prominently in osteosarcoma, occurring in up to 62% of tumor regions and driving intratumoral heterogeneity through persistent genomic crises. Next-generation sequencing, optical genome mapping, and emerging technologies like single-cell sequencing empower researchers to detect and characterize these complex structural variants, demonstrating how a single catastrophic event can profoundly influence osteosarcoma progression over time. While targeted therapies for osteosarcoma have proven elusive, innovative strategies harnessing comprehensive genomic profiling and patient-derived preclinical models hold promise for uncovering tumor-specific vulnerabilities tied to chromoanagenesis. Ultimately, unraveling how these rapid, large-scale rearrangements fuel osteosarcoma's aggressive nature will not only refine disease classification and prognosis but also pave the way for novel therapeutic approaches to enhance patient outcomes.

摘要

染色体骤变是一种灾难性的基因组现象,涉及在一个或几个细胞周期内突然发生的广泛重排。在骨肉瘤(儿童和青少年中最常见的恶性骨肿瘤)中,这些事件会极大地改变基因组格局,经常破坏诸如 和 等关键肿瘤抑制基因,放大癌基因表达,并推动肿瘤进展和演变。本综述阐明了诸如染色体碎裂和染色体合成等关键染色体骤变机制是如何由复制应激和受损的DNA修复途径产生的,最终导致骨肉瘤中的基因组不稳定。染色体碎裂在骨肉瘤中显著存在,在高达62%的肿瘤区域发生,并通过持续的基因组危机驱动肿瘤内异质性。新一代测序、光学基因组图谱绘制以及单细胞测序等新兴技术使研究人员能够检测和表征这些复杂的结构变异,展示了单个灾难性事件如何随着时间的推移深刻影响骨肉瘤的进展。虽然骨肉瘤的靶向治疗尚未成功,但利用全面基因组分析和患者来源的临床前模型的创新策略有望揭示与染色体骤变相关的肿瘤特异性脆弱性。最终,弄清楚这些快速、大规模的重排如何助长骨肉瘤的侵袭性不仅将完善疾病分类和预后,还将为改善患者预后的新型治疗方法铺平道路。

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本文引用的文献

1
Single-cell and spatial transcriptomics reveals the key role of MCAM tip-like endothelial cells in osteosarcoma metastasis.单细胞和空间转录组学揭示了MCAM顶端样内皮细胞在骨肉瘤转移中的关键作用。
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Ongoing chromothripsis underpins osteosarcoma genome complexity and clonal evolution.持续的染色体碎裂是骨肉瘤基因组复杂性和克隆进化的基础。
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Single-cell multiomics analysis reveals dynamic clonal evolution and targetable phenotypes in acute myeloid leukemia with complex karyotype.
单细胞多组学分析揭示了复杂核型急性髓系白血病中的动态克隆进化和可靶向表型。
Nat Genet. 2024 Dec;56(12):2790-2803. doi: 10.1038/s41588-024-01999-x. Epub 2024 Nov 25.
4
Multi-omic and single-cell profiling of chromothriptic medulloblastoma reveals genomic and transcriptomic consequences of genome instability.多组学和单细胞分析揭示了染色体重排型髓母细胞瘤基因组不稳定性的基因组和转录组后果。
Nat Commun. 2024 Nov 23;15(1):10183. doi: 10.1038/s41467-024-54547-w.
5
CDK4 is co-amplified with either TP53 promoter gene fusions or MDM2 through distinct mechanisms in osteosarcoma.在骨肉瘤中,细胞周期蛋白依赖性激酶4(CDK4)通过不同机制与TP53启动子基因融合体或MDM2共同扩增。
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Genomic Insights Into High-Grade Infarct-Associated Bone Sarcomas.骨巨细胞瘤的基因组学研究进展
Mod Pathol. 2024 Oct;37(10):100572. doi: 10.1016/j.modpat.2024.100572. Epub 2024 Jul 20.
7
A comprehensive approach to evaluate genetic abnormalities in multiple myeloma using optical genome mapping.一种使用光学基因组图谱评估多发性骨髓瘤基因异常的综合方法。
Blood Cancer J. 2024 May 3;14(1):78. doi: 10.1038/s41408-024-01059-x.
8
Insights into the mechanisms and structure of breakage-fusion-bridge cycles in cervical cancer using long-read sequencing.利用长读测序技术深入了解宫颈癌中断裂-融合-桥循环的机制和结构。
Am J Hum Genet. 2024 Mar 7;111(3):544-561. doi: 10.1016/j.ajhg.2024.01.002. Epub 2024 Feb 1.
9
Chromoscope: interactive multiscale visualization for structural variation in human genomes.染色体观察镜:用于人类基因组结构变异的交互式多尺度可视化工具。
Nat Methods. 2023 Dec;20(12):1834-1835. doi: 10.1038/s41592-023-02056-x.
10
scNanoHi-C: a single-cell long-read concatemer sequencing method to reveal high-order chromatin structures within individual cells.scNanoHi-C:一种用于揭示单个细胞内高阶染色质结构的单细胞长读长串联体测序方法。
Nat Methods. 2023 Oct;20(10):1493-1505. doi: 10.1038/s41592-023-01978-w. Epub 2023 Aug 28.