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人工林根际微生物群落网络特征对间伐强度的早期响应

Early Response of Rhizosphere Microbial Community Network Characteristics to Thinning Intensity in Plantations.

作者信息

Liu Size, Yin Haifeng, Su Yu, Li Xianwei, Fan Chuan

机构信息

College of Forestry, Sichuan Agricultural University, Chengdu 611130, China.

Sichuan Academy of Forestry, Chengdu 610081, China.

出版信息

Microorganisms. 2025 Jun 11;13(6):1357. doi: 10.3390/microorganisms13061357.

Abstract

Rhizosphere microorganisms mediate the material exchange and chemical cycling between plant roots and soil. However, the response mechanisms of the rhizosphere microbial community, especially its co-occurrence patterns, to thinning remain poorly understood. We investigated the rhizosphere microbial communities of under different thinning intensities, including control (CK, 0%), light-intensity thinning (LIT, 10%), moderate-intensity thinning (MIT, 30%), and high-intensity thinning (HIT, 50%). Basic taxonomic information was obtained through high-throughput sequencing, while R software was utilized to identify thinning-sensitive operational taxonomic units (tsOTUs), construct co-occurrence networks, and perform other statistical analyses. Although no discernible patterns were observed in α-diversity changes, the Kruskal-Wallis test indicated that season was the primary factor driving α-diversity variation. Meanwhile, thinning intensity significantly shaped the rhizosphere microbial community structures, with each intensity harboring a specific tsOTUs subset. Although the top three modules of the meta-co-occurrence networks in summer and winter exhibited consistent tsOTU composition, winter triggered changes in network connectivity. Regardless of summer or winter, the number of network nodes under MIT was the highest. Additionally, after thinning, the relative abundances of most keystone taxa declined; however, MIT facilitated the enrichment of certain keystone taxa. Collectively, thinning profoundly shapes microbial community composition and network characteristics. Moderate thinning intensity may represent the optimal thinning intensity for the studied plantations.

摘要

根际微生物介导植物根系与土壤之间的物质交换和化学循环。然而,根际微生物群落的响应机制,尤其是其共生模式,对间伐的响应仍知之甚少。我们调查了不同间伐强度下[具体植物名称未给出]的根际微生物群落,包括对照(CK,0%)、轻度间伐(LIT,10%)、中度间伐(MIT,30%)和高强度间伐(HIT,50%)。通过高通量测序获得基本分类信息,同时利用R软件识别对间伐敏感的可操作分类单元(tsOTUs)、构建共生网络并进行其他统计分析。虽然在α多样性变化中未观察到明显模式,但Kruskal-Wallis检验表明季节是驱动α多样性变化的主要因素。同时,间伐强度显著塑造了根际微生物群落结构,每种强度都有特定的tsOTUs子集。尽管夏季和冬季元共生网络的前三个模块表现出一致的tsOTU组成,但冬季引发了网络连通性的变化。无论夏季还是冬季,MIT下的网络节点数量都是最高的。此外,间伐后,大多数关键类群的相对丰度下降;然而,MIT促进了某些关键类群的富集。总体而言,间伐深刻影响微生物群落组成和网络特征。中度间伐强度可能是所研究人工林的最佳间伐强度。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e78b/12195532/7a9c0bc12328/microorganisms-13-01357-g001.jpg

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