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某物种中基因家族的综合系统发育基因组学与表达谱分析揭示了它们在发育和胁迫耐受性中的作用。

Integrated Phylogenomics and Expression Profiling of the Gene Family in Reveals Their Role in Development and Stress Tolerance.

作者信息

Zhang Yunlu, Zhao Ke, Wang Ruisen, Zhu Yang, Zhang Huiqi, Zhang Jingyi, Yao Xiangtan, Qin Cheng, Zhang Pengcheng

机构信息

College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 311121, China.

Institute of Economic Crop Sciences, Jiaxing Academy of Agricultural Sciences, Jiaxing 314016, China.

出版信息

Plants (Basel). 2025 Jun 17;14(12):1858. doi: 10.3390/plants14121858.

Abstract

The () gene family plays a crucial role in multiple biological processes, including microtubule organization, cell division regulation, fruit morphogenesis, stress adaptation, and growth and development. To delve deeper into the potential functions of in , this study employed bioinformatics methods to systematically identify and analyze the family genes in (Westar). Using the model plant as a reference and based on six conserved motifs, 100 members were first identified in . These genes are widely distributed across 19 chromosomes, and most exhibit nuclear localization characteristics. Through gene collinearity analysis among , , , , and , we speculate that and may share a similar evolutionary history. Analysis of cis-acting elements in the 2000 bp upstream region of gene promoters revealed numerous elements related to abiotic stress response and hormone regulation. Furthermore, qRT-PCR data supported these findings, indicating that multiple genes actively participate in the growth and development process and abiotic stress tolerance of . In summary, exhibit significant functions in stress adaptation, growth, and development. This study not only enhances our understanding of the functions of the gene family but also provides new perspectives and strategies for further exploring their regulatory mechanisms and potential applications.

摘要

()基因家族在多种生物学过程中发挥着关键作用,包括微管组织、细胞分裂调控、果实形态发生、胁迫适应以及生长发育。为了更深入地探究()在()中的潜在功能,本研究采用生物信息学方法,系统地鉴定和分析了(品种名:韦斯塔)中的()家族基因。以模式植物(拟南芥)为参考,并基于六个保守基序,首先在(韦斯塔)中鉴定出100个()成员。这些基因广泛分布在19条染色体上,且大多数呈现核定位特征。通过对(韦斯塔)、(拟南芥)、(水稻)、(玉米)和(大豆)之间的基因共线性分析,我们推测(韦斯塔)和(拟南芥)可能具有相似的进化历史。对()基因启动子上游2000 bp区域的顺式作用元件分析揭示了众多与非生物胁迫响应和激素调控相关的元件。此外,qRT-PCR数据支持了这些发现,表明多个()基因积极参与(韦斯塔)的生长发育过程和对非生物胁迫的响应。总之,()在胁迫适应、生长和发育方面表现出重要功能。本研究不仅增进了我们对()基因家族功能的理解,还为进一步探索其调控机制和潜在应用提供了新的视角和策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2be4/12197291/ba7f9e582b5c/plants-14-01858-g001.jpg

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