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RPA3和RFC3作为计算机断层扫描血管造影下心肌梗死诊断的生物标志物。

RPA3 and RFC3 as biomarkers for myocardial infarction diagnosis under computed tomography angiography.

作者信息

Zhang Shuang, Peng Ruchen, Xin Ruiqiang, Shen Xiuzhi, Zheng Jingli

机构信息

Department of Radiology, Beijing Luhe Hospital, Capital Medical University, Beijing, China.

Department of Radiology, Beijing Friendship Hospital, Capital Medical University, Beijing, China.

出版信息

Medicine (Baltimore). 2025 Jun 27;104(26):e43087. doi: 10.1097/MD.0000000000043087.

Abstract

Computed tomography angiography (CTA) technology holds significant value in the diagnosis and management of acute myocardial infarction. The severity of myocardial infarction lies in its potential to cause ischemic death of myocardial tissue, severely impacting cardiac function, and even posing a threat to life. However, the molecular mechanisms underlying acute myocardial infarction diagnosed by CTA remain unclear. We utilized CTA technology for coronary artery imaging, collecting whole blood samples from confirmed myocardial infarction patients and control patients. The "limma" R package was used for probe summarization and background correction of GSE229044. Weighted gene co-expression network analysis (WGCNA) was performed to identify significant module. gene set enrichment analysis and Metascape database provides comprehensive gene list annotation and analysis resources, with visualization export capabilities. Additionally, we calculated the top 10 genes using 3 algorithms (Maximal Clique Centrality, Density of Maximum Neighborhood Component, EcCentricity) and obtained their intersection, visualizing and exporting the core gene list after visualization. In order to explore the further function of hub genes, comparative toxicogenomics database Analysis and Immune Infiltration Analysis were implied. Through R software, we ultimately identified 827 differentially expressed genes. According to the gene ontology analysis, they were mainly enriched in processes such as organic acid metabolic processes, chromosomal centromeric regions, and oxidoreductase activity. In the Kyoto encyclopedia of genes and genomes analysis, they were primarily concentrated in metabolic pathways, the P53 signaling pathway, and the PPAR signaling pathway. Ultimately, we obtained 5 core genes (PCNA, RPA3, RPA1, RFC2, RFC3). Core genes (RPA3, RFC3) were highly expressed in myocardial infarction samples and lowly expressed in normal samples. Furthermore, we analyzed the correlation between infiltrating immune cells and obtained a co-expression pattern diagram of immune cell components, indicating that when NK_cells_activated expression was high, T_cells_CD4_naive expression was also high. A highly positive correlation between NK_cells_activated and T_cells_CD4_naive expression levels may affect the progression of myocardial infarction. The RPA3 and RFC3 genes may serve as core biomarkers for myocardial infarction diagnosed by CTA technology.

摘要

计算机断层扫描血管造影(CTA)技术在急性心肌梗死的诊断和治疗中具有重要价值。心肌梗死的严重性在于其有可能导致心肌组织缺血性死亡,严重影响心脏功能,甚至对生命构成威胁。然而,通过CTA诊断的急性心肌梗死背后的分子机制仍不清楚。我们利用CTA技术进行冠状动脉成像,从确诊的心肌梗死患者和对照患者中采集全血样本。使用“limma”R包对GSE229044进行探针汇总和背景校正。进行加权基因共表达网络分析(WGCNA)以识别显著模块。基因集富集分析和Metascape数据库提供全面的基因列表注释和分析资源,并具有可视化导出功能。此外,我们使用3种算法(最大团中心性、最大邻域成分密度、偏心度)计算前10个基因,并获得它们的交集,可视化后导出核心基因列表。为了探索枢纽基因的进一步功能,我们进行了比较毒理基因组学数据库分析和免疫浸润分析。通过R软件,我们最终鉴定出827个差异表达基因。根据基因本体分析,它们主要富集在有机酸代谢过程、染色体着丝粒区域和氧化还原酶活性等过程中。在京都基因与基因组百科全书分析中,它们主要集中在代谢途径、P53信号通路和PPAR信号通路中。最终,我们获得了5个核心基因(PCNA、RPA3、RPA1、RFC2、RFC3)。核心基因(RPA3、RFC3)在心肌梗死样本中高表达,在正常样本中低表达。此外,我们分析了浸润免疫细胞之间的相关性,并获得了免疫细胞成分的共表达模式图,表明当NK_cells_activated表达高时,T_cells_CD4_naive表达也高。NK_cells_activated和T_cells_CD4_naive表达水平之间的高度正相关可能会影响心肌梗死的进展。RPA3和RFC3基因可能作为通过CTA技术诊断心肌梗死的核心生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4790/12212783/4eac8c6b6583/medi-104-e43087-g001.jpg

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