Zhang Feilong, Liu Xinmeng, Li Ziyao, Li Zhihua, Lei Zichen, Fan Yanyan, Yang Xinrui, Liu Qi, Ma Yiqun, Lu Binghuai
Laboratory of Clinical Microbiology and Infectious Diseases, Department of Pulmonary and Critical Care Medicine, China-Japan Friendship Hospital; Beijing Key Laboratory of Surveillance, Early Warning and Pathogen Research on Emerging Infectious Diseases; National Center for Respiratory Medicine; State Key Laboratory of Respiratory Health and Multimorbidity; National Clinical Research Center for Respiratory Diseases; Institute of Respiratory Medicine, Chinese Academy of Medical Sciences, Beijing, P.R. China.
Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing, China.
Nat Commun. 2025 Jul 1;16(1):5574. doi: 10.1038/s41467-025-60765-7.
KPC and NDM co-producing carbapenem-resistant Klebsiella pneumoniae (KN-CRKP) showed an upward trend; nevertheless, global systematic and comprehensive analyses profiling remain lacking. 968 local CRKP were collected from 6 provinces in China, and 64,354 genomes were retrieved from GenBank. All 413 genomes of KN-CRKP were obtained from 32 countries, including 16 subtypes of KN-CRKP. The top three CRKP subtypes, K2N1-CRKP, K2N5-CRKP and K3N1-CRKP, exhibited distinct geographic distributions, with K2N1-CRKP and K2N5-CRKP primarily circulating in China while K3N1-CRKP showed predominant prevalence in USA. Meanwhile, ST11-KL64, ST11-KL47, and ST258-KL107, were the three most prevalent ST and KL, and 64.3% of ST11-KL64 KN-CRKP belonged to hypervirulent strains. Genomes revealed Clone Group 1, accounting for 55.0% of KN-CRKP, shifting from KL47 to KL64 and carrying more hypervirulence genes, has a significant advantage in adhesion, invasion, and proliferation, and its dispersal was the primary driver contributing to the worldwide spread of KN-CRKP. Furthermore, ST11 KN-CRKP was generally formed by KPC-producing CRKP acquiring bla-carrying plasmid and novel hybrid plasmids co-encoding KPC and NDM have occurred. Aztreonam/avibactam and cefiderocol were promising antimicrobial agents against KN-CRKP. The global KN-CRKP research, spanning from 2005 to 2024, provides valuable insights into the global transmission, dynamics, and treatment of KN-CRKP.
产KPC和NDM的耐碳青霉烯肺炎克雷伯菌(KN-CRKP)呈上升趋势;然而,全球范围内的系统全面分析概况仍较为缺乏。从中国6个省份收集了968株本地CRKP,并从GenBank中检索到64354个基因组。所有413个KN-CRKP基因组来自32个国家,包括16个KN-CRKP亚型。前三大CRKP亚型,即K2N1-CRKP、K2N5-CRKP和K3N1-CRKP,呈现出不同的地理分布,K2N1-CRKP和K2N5-CRKP主要在中国传播,而K3N1-CRKP在美国占主导地位。同时,ST11-KL64、ST11-KL47和ST258-KL107是三种最常见的ST和KL,64.3%的ST11-KL64 KN-CRKP属于高毒力菌株。基因组显示克隆群1占KN-CRKP的55.0%,从KL47转变为KL64并携带更多高毒力基因,在黏附、侵袭和增殖方面具有显著优势,其传播是推动KN-CRKP在全球传播的主要因素。此外,ST11 KN-CRKP通常由产KPC的CRKP获得携带bla的质粒形成,并且已经出现了同时编码KPC和NDM的新型杂交质粒。氨曲南/阿维巴坦和头孢地尔是针对KN-CRKP的有前景的抗菌药物。2005年至2024年的全球KN-CRKP研究为KN-CRKP的全球传播、动态变化和治疗提供了有价值的见解。