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霍乱弧菌O1中普遍存在的染色体融合

Prevalent chromosome fusion in Vibrio cholerae O1.

作者信息

Cuénod Aline, Chac Denise, Khan Ashraful I, Chowdhury Fahima, Hyppa Randy W, Markiewicz Susan M, Rice Amelia, Kholwadwala Akhil, Calderwood Stephen B, Ryan Edward T, Harris Jason B, LaRocque Regina C, Bhuiyan Taufiqur R, Smith Gerald R, Qadri Firdausi, Lypaczewski Patrick, Weil Ana A, Shapiro B Jesse

机构信息

Department of Microbiology and Immunology, McGill University, Montréal, QC, Canada.

Department of Medicine, University of Washington, Seattle, WA, USA.

出版信息

Nat Commun. 2025 Jul 1;16(1):5830. doi: 10.1038/s41467-025-60699-0.

DOI:10.1038/s41467-025-60699-0
PMID:40593602
Abstract

Two circular chromosomes are a defining feature of the bacterial family Vibrionaceae, including the pathogen Vibrio cholerae, with rare reports of isolates with a single, fused chromosome. Here, we use long-read sequencing to analyse 467 V. cholerae O1 isolates from 47 cholera patients and household contacts in Bangladesh. We identify several independent chromosome fusion events that are likely transmissible within a household. Fusions occur in a 12 kilobase-pair homologous sequence shared between the two chromosomes and are stable for at least 200 generations under laboratory conditions. We find no detectable effect of fusion on V. cholerae growth, virulence factor expression, or biofilm formation. The factors promoting fusion, affecting chromosome stability, and subtle phenotypic or clinical consequences merit further investigation.

摘要

两个环状染色体是弧菌科细菌的一个决定性特征,包括病原体霍乱弧菌,仅有罕见报道称存在具有单个融合染色体的分离株。在此,我们使用长读长测序技术分析了来自孟加拉国47名霍乱患者及其家庭接触者的467株霍乱弧菌O1分离株。我们鉴定出了几个可能在家庭内部传播的独立染色体融合事件。融合发生在两条染色体之间共享的一个12千碱基对的同源序列中,并且在实验室条件下至少200代都是稳定的。我们发现融合对霍乱弧菌的生长、毒力因子表达或生物膜形成没有可检测到的影响。促进融合、影响染色体稳定性以及细微表型或临床后果的因素值得进一步研究。

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本文引用的文献

1
Dynamic transitions of initiator binding coordinate the replication of the two chromosomes in Vibrio cholerae.起始子结合的动态转变协调霍乱弧菌中两条染色体的复制。
Nat Commun. 2025 Jan 8;16(1):485. doi: 10.1038/s41467-024-55598-9.
2
O1 experiences mild bottlenecks through the gastrointestinal tract in some but not all cholera patients.在部分但并非所有霍乱患者中,O1通过胃肠道时会经历轻度瓶颈期。
Microbiol Spectr. 2024 Aug 6;12(8):e0078524. doi: 10.1128/spectrum.00785-24. Epub 2024 Jun 25.
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Rationally designed chromosome fusion does not prevent rapid growth of Vibrio natriegens.
理性设计的染色体融合并不能阻止嗜盐古菌的快速生长。
Commun Biol. 2024 May 2;7(1):519. doi: 10.1038/s42003-024-06234-1.
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Time- and memory-efficient genome assembly with Raven.使用Raven进行高效省时的基因组组装。
Nat Comput Sci. 2021 May;1(5):332-336. doi: 10.1038/s43588-021-00073-4. Epub 2021 May 20.
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Genomic epidemiology of Vibrio cholerae during a mass vaccination campaign of displaced communities in Bangladesh.孟加拉国大规模流离失所者社区疫苗接种运动期间霍乱弧菌的基因组流行病学研究。
Nat Commun. 2023 Jun 24;14(1):3773. doi: 10.1038/s41467-023-39415-3.
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Genomic attributes of Vibrio cholerae O1 responsible for 2022 massive cholera outbreak in Bangladesh.造成 2022 年孟加拉国大规模霍乱疫情的霍乱弧菌 O1 的基因组特征。
Nat Commun. 2023 Mar 1;14(1):1154. doi: 10.1038/s41467-023-36687-7.
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GTDB-Tk v2: memory friendly classification with the genome taxonomy database.GTDB-Tk v2:使用基因组分类数据库实现内存友好的分类。
Bioinformatics. 2022 Nov 30;38(23):5315-5316. doi: 10.1093/bioinformatics/btac672.
9
The Vibrio cholerae Seventh Pandemic Islands act in tandem to defend against a circulating phage.霍乱弧菌第七次大流行岛屿协同作用以抵御循环噬菌体。
PLoS Genet. 2022 Aug 26;18(8):e1010250. doi: 10.1371/journal.pgen.1010250. eCollection 2022 Aug.
10
Prediction of Antibiotic Susceptibility Profiles of Isolates From Whole Genome Illumina and Nanopore Sequencing Data: CholerAegon.基于全基因组Illumina和纳米孔测序数据预测分离株的抗生素敏感性谱:CholerAegon
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