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毛细管电泳可检测非对称单链DNA寡聚体中发夹结构和自身二聚体的同时存在。

Capillary Electrophoresis Can Detect the Simultaneous Presence of Hairpins and Self-Dimers in Non-Symmetric, Single-Stranded DNA Oligomers.

作者信息

Stellwagen Earle, Stellwagen Nancy C

机构信息

Department of Biochemistry, University of Iowa, Iowa City, Iowa, USA.

出版信息

Electrophoresis. 2025 Jun;46(11-12):679-686. doi: 10.1002/elps.70005. Epub 2025 Jul 2.

DOI:10.1002/elps.70005
PMID:40600427
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12366245/
Abstract

Free solution capillary electrophoresis (CE) has been used to show that non-symmetric, single-stranded DNA oligomers containing 26 nucleotides can exhibit peaks in the electropherograms that correspond to the simultaneous presence of self-dimers and hairpins in the solution. The overlapping hairpin and self-dimer peaks were observed at temperatures close to 15°C in background electrolytes containing at least 80 mM Na ions. With increasing temperature, the self-dimers were converted first into hairpins and then into random coils at still higher temperatures. The results suggest that hairpins can be an intermediary step in the pathway between DNA duplexes and single-strands.

摘要

自由溶液毛细管电泳(CE)已被用于表明,含有26个核苷酸的非对称单链DNA寡聚物在电泳图中可呈现出对应于溶液中同时存在自身二聚体和发夹结构的峰。在含有至少80 mM钠离子的背景电解质中,在接近15°C的温度下观察到了重叠的发夹峰和自身二聚体峰。随着温度升高,自身二聚体首先转化为发夹结构,然后在更高温度下转化为无规卷曲。结果表明,发夹结构可能是DNA双链体和单链之间途径中的一个中间步骤。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0909/12366245/ef1b53287e32/ELPS-46--g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0909/12366245/0c3a02a79bd5/ELPS-46--g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0909/12366245/2dad3761747f/ELPS-46--g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0909/12366245/96554088d84a/ELPS-46--g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0909/12366245/329742259073/ELPS-46--g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0909/12366245/ef1b53287e32/ELPS-46--g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0909/12366245/0c3a02a79bd5/ELPS-46--g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0909/12366245/2dad3761747f/ELPS-46--g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0909/12366245/96554088d84a/ELPS-46--g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0909/12366245/329742259073/ELPS-46--g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0909/12366245/ef1b53287e32/ELPS-46--g003.jpg

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本文引用的文献

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Effect of Internal and Bulge Loops on the Thermal Stability of Small DNA Duplexes.内部环和膨出环对小 DNA 双链体热稳定性的影响。
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Electrophoretic mobility is a reporter of hairpin structure in single-stranded DNA oligomers.电泳迁移率是单链DNA寡聚物中发夹结构的一个指标。
Biochemistry. 2007 Sep 25;46(38):10931-41. doi: 10.1021/bi701058f. Epub 2007 Sep 1.