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IV 型酯酶催化邻苯二甲酸酯水解的分子机制洞察

Molecular Insight Into the Hydrolysis of Phthalate Esters by a Family IV Esterase.

作者信息

Rong Zhen, Hong Li-Guo, Huo Ying-Yi, Li Jixi, Zheng Dao-Qiong, Ha Yang, Fan Jeffrey, Xu Xue-Wei, Wu Yue-Hong

机构信息

State Key Laboratory of Submarine Geoscience, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, People's Republic of China.

School of Life Sciences, Shanghai Engineering Research Center of Industrial Microorganisms, Fudan University, Shanghai, People's Republic of China.

出版信息

Environ Microbiol. 2025 Jul;27(7):e70134. doi: 10.1111/1462-2920.70134.

Abstract

Phthalate esters (PAEs) are prevalent environmental contaminants, with their biodegradation efficiently driven by microorganisms through ester bond hydrolysis. This study investigates the mechanism of Poc14, a novel family IV esterase, using x-ray crystallography, bioinformatics, biochemistry and site-directed mutagenesis. Phylogenetic analysis classifies Poc14 as a family IV esterase with conserved catalytic motifs crucial for its activity. Poc14 retains over 80% activity at 50°C for 4 h and tolerates up to 5% methanol or DMF, though surfactants like Tweens inhibit its function. Poc14 activity is independent of metal ions, and the addition of EDTA further enhances its activity by approximately 130%. The 1.8 Å crystal structure reveals a CAP domain and two substrate channels. Enzyme assays show Poc14 hydrolyses short-chain diethyl phthalate (DEP) (K = 0.068 mM, V = 9975 μM/min/mg) but not long-chain di(2-ethylhexyl) phthalate (DEHP) due to steric hindrance. Molecular docking assessed Poc14's potential to hydrolyse DEP and DEHP after residue mutations, resulting in the Poc14-AAG variant. Poc14-AAG could hydrolyse one bond of DEHP and diester bonds of DEP. Our study positions Poc14 as a promising enzyme for environmental remediation, with potential for optimising DEHP degradation and exploring dimerisation effects.

摘要

邻苯二甲酸酯(PAEs)是普遍存在的环境污染物,其生物降解可通过微生物有效驱动酯键水解来实现。本研究利用X射线晶体学、生物信息学、生物化学和定点诱变技术,研究了一种新型IV族酯酶Poc14的作用机制。系统发育分析将Poc14归类为IV族酯酶,其具有对其活性至关重要的保守催化基序。Poc14在50°C下4小时仍保留超过80%的活性,可耐受高达5%的甲醇或二甲基甲酰胺,不过吐温等表面活性剂会抑制其功能。Poc14的活性不依赖于金属离子,添加乙二胺四乙酸(EDTA)可使其活性进一步提高约130%。1.8埃的晶体结构揭示了一个CAP结构域和两个底物通道。酶活性测定表明,由于空间位阻,Poc14可水解短链邻苯二甲酸二乙酯(DEP)(K = 0.068 mM,V = 9975 μM/分钟/毫克),但不能水解长链邻苯二甲酸二(2-乙基己基)酯(DEHP)。分子对接评估了Poc14在残基突变后水解DEP和DEHP的潜力,产生了Poc14-AAG变体。Poc14-AAG可以水解DEHP的一个键和DEP的二酯键。我们的研究将Poc14定位为一种有前景的用于环境修复的酶,具有优化DEHP降解和探索二聚化效应的潜力。

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