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辣椒(Capsicum annuum L.)中DFR基因家族的鉴定与特征分析以及花青素生物合成候选基因的克隆

Identification and characterization of DFR gene family and cloning of candidate genes for anthocyanin biosynthesis in pepper (Capsicum annuum L.).

作者信息

An Yu, Li Na, Zhang Ruiling, Wang Shu, Wang June

机构信息

Shanxi Key Laboratory of Germplasm Resources Innovation and Utilization of Vegetable and Flower, College of Horticulture, Shanxi Agricultural University, Jinzhong, 030801, China.

出版信息

BMC Plant Biol. 2025 Jul 2;25(1):830. doi: 10.1186/s12870-025-06743-z.

DOI:10.1186/s12870-025-06743-z
PMID:40604376
Abstract

Dihydroflavonol-4 reductase (DFR) is a key enzyme in plant anthocyanin synthesis and can affect the synthesis of anthocyanin. In order to explore the role of DFR in anthocyanin synthesis of capsicum, the sequence of the DFR gene family was downloaded from the Arabidopsis genome database. The study showed the presence of nine members of the DFR gene family in pepper, which are primarily localized in the cytoplasm and chloroplasts. The majority of these proteins exhibit hydrophilic characteristics, with their secondary structure predominantly consisting of α-helices and random coils. Furthermore, these genes can be categorized into four distinct subfamilies, with the gene structure and conserved motifs of CaDFR members within the same subfamily providing robust support for this classification. The promoter regions of CaDFRs are enriched with numerous light-responsive elements, phytohormone-responsive elements, stress-responsive elements, and elements associated with plant growth and development, in addition to binding sites for 35 different transcription factors. According to the results of qRT-PCR analysis, the expression level of CaDFR5 was consistent with the change of anthocyanin content, and the full length of the CaDFR5 gene was further cloned. This study provides an important reference for improving fruit colour and lays a foundation for further exploring the function of the DFR gene family.

摘要

二氢黄酮醇 - 4 - 还原酶(DFR)是植物花青素合成中的关键酶,可影响花青素的合成。为探究DFR在辣椒花青素合成中的作用,从拟南芥基因组数据库下载了DFR基因家族序列。研究表明辣椒中存在DFR基因家族的九个成员,它们主要定位于细胞质和叶绿体中。这些蛋白质大多具有亲水性特征,其二级结构主要由α - 螺旋和无规卷曲组成。此外,这些基因可分为四个不同的亚家族,同一亚家族内CaDFR成员的基因结构和保守基序为这一分类提供了有力支持。CaDFRs的启动子区域除了富含35种不同转录因子的结合位点外,还富含大量光响应元件、植物激素响应元件、胁迫响应元件以及与植物生长发育相关的元件。根据qRT - PCR分析结果,CaDFR5的表达水平与花青素含量变化一致,并进一步克隆了CaDFR5基因的全长。本研究为改善果实颜色提供了重要参考,为进一步探究DFR基因家族的功能奠定了基础。

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本文引用的文献

1
The Genome-Wide Identification of the Dihydroflavonol 4-Reductase (DFR) Gene Family and Its Expression Analysis in Different Fruit Coloring Stages of Strawberry.草莓不同果实着色阶段二氢查尔酮 4-还原酶(DFR)基因家族的全基因组鉴定及其表达分析。
Int J Mol Sci. 2024 Sep 13;25(18):9911. doi: 10.3390/ijms25189911.
2
Transcriptome analysis reveals the mechanism for blue-light-induced biosynthesis of delphinidin derivatives in harvested purple pepper fruit.转录组分析揭示了蓝光诱导采后紫椒果实中飞燕草素衍生物生物合成的机制。
Front Plant Sci. 2023 Oct 26;14:1289120. doi: 10.3389/fpls.2023.1289120. eCollection 2023.
3
Comparison of Bioactive Compounds and Antioxidant Activities in Differentially Pigmented Fruits.
不同颜色果实中生物活性化合物和抗氧化活性的比较。
Molecules. 2023 Aug 27;28(17):6272. doi: 10.3390/molecules28176272.
4
Identification and Expression Analysis of Gene Family in L.L.中基因家族的鉴定与表达分析
Plants (Basel). 2023 Jul 7;12(13):2583. doi: 10.3390/plants12132583.
5
Metabolome, Plant Hormone, and Transcriptome Analyses Reveal the Mechanism of Spatial Accumulation Pattern of Anthocyanins in Peach Flesh.代谢组、植物激素和转录组分析揭示桃果肉中花色苷空间积累模式的机制
Foods. 2023 Jun 7;12(12):2297. doi: 10.3390/foods12122297.
6
Tree peony PsMYB44 negatively regulates petal blotch distribution by inhibiting dihydroflavonol-4-reductase gene expression.牡丹 PsMYB44 通过抑制二氢黄酮醇 4-还原酶基因的表达来负调控花瓣斑纹的分布。
Ann Bot. 2023 Mar 8;131(2):323-334. doi: 10.1093/aob/mcac155.
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MPK6-mediated HY5 phosphorylation regulates light-induced anthocyanin accumulation in apple fruit.MPK6 介导的 HY5 磷酸化调节苹果果实中光诱导的花色素苷积累。
Plant Biotechnol J. 2023 Feb;21(2):283-301. doi: 10.1111/pbi.13941. Epub 2022 Oct 27.
8
Anthocyanins accumulation analysis of correlated genes by metabolome and transcriptome in green and purple peppers (Capsicum annuum).通过代谢组学和转录组学分析绿色和紫色甜椒(Capsicum annuum)中相关基因的花色苷积累。
BMC Plant Biol. 2022 Jul 22;22(1):358. doi: 10.1186/s12870-022-03746-y.
9
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Plant Physiol Biochem. 2021 Dec;169:203-210. doi: 10.1016/j.plaphy.2021.11.016. Epub 2021 Nov 17.
10
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Sheng Wu Gong Cheng Xue Bao. 2021 Apr 25;37(4):1312-1323. doi: 10.13345/j.cjb.200466.