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果蝇中多梳蛋白组表观遗传抑制因子对眼睛特化的差异调控。

Differential regulation of eye specification in Drosophila by Polycomb Group epigenetic repressors.

作者信息

Brown Haley E, Jean-Guillaume Claude, Weasner Brandon P, Kumar Justin P

机构信息

Department of Biology, Indiana University, Bloomington, IN 47405, USA.

Department of Biomolecular Chemistry, University of Wisconsin, Madison, Wisconsin 53706, USA.

出版信息

Development. 2025 Jul 15;152(14). doi: 10.1242/dev.204317. Epub 2025 Jul 29.

DOI:10.1242/dev.204317
PMID:40621729
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12377816/
Abstract

During metazoan development, chromatin plasticity and genetic regulation are tightly connected to establish proper tissue fate and patterning. Drosophila imaginal discs are excellent models to study these processes as both genetic and mechanical injury can redirect their fate during regeneration. Reducing expression of Polycomb (Pc) results in the ectopic activation of the wing selector gene vestigial (vg) which in turn interacts with its DNA-binding partner Scalloped (Sd) - this forces the eye to transform into a wing. Reductions of other Polycomb Group members alone do not phenocopy this transformation. However, knocking down Sex comb on midleg (Scm) or Scm-related gene containing four mbt domains (Sfmbt) alongside the Pax6 gene twin of eyeless (toy) enables the eye-to-wing transformation. Using high throughput sequencing we show that toy-Sfmbt and toy-Scm knockdowns alter expression of both wing selector and Hox genes. These findings provide new insights into how the fate of the eye is specified.

摘要

在后生动物发育过程中,染色质可塑性和基因调控紧密相连,以建立适当的组织命运和模式。果蝇成虫盘是研究这些过程的优秀模型,因为遗传损伤和机械损伤都能在再生过程中改变其命运。降低多梳蛋白(Pc)的表达会导致翅选择基因残翅(vg)的异位激活,进而与它的DNA结合伴侣扇贝蛋白(Sd)相互作用——这会迫使眼睛转变为翅膀。单独降低其他多梳蛋白家族成员的表达并不会模拟这种转变。然而,在敲低无眼基因(ey)的同源基因双无眼(toy)的同时,敲低中腿性梳(Scm)或含有四个mbt结构域的Scm相关基因(Sfmbt),则会使眼睛转变为翅膀。通过高通量测序,我们发现敲低toy-Sfmbt和toy-Scm会改变翅选择基因和Hox基因的表达。这些发现为眼睛命运的指定方式提供了新的见解。

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本文引用的文献

1
Control of fate specification within the dorsal head of Drosophila melanogaster.调控果蝇胚胎头部背侧命运特化。
Development. 2024 Aug 15;151(16). doi: 10.1242/dev.199885. Epub 2024 Aug 27.
2
Polycomb safeguards imaginal disc specification through control of the Vestigial-Scalloped complex.多梳抑制复合体通过调控 Vestigial-Scalloped 复合物来保障成虫盘的特化。
Development. 2023 Sep 15;150(18). doi: 10.1242/dev.201872. Epub 2023 Sep 25.
3
A CUT&RUN protocol to determine patterns of epigenetic marks in imaginal discs of Drosophila.一种 CUT&RUN 方案,用于确定果蝇的成虫盘的表观遗传标记模式。
STAR Protoc. 2023 Mar 17;4(1):101878. doi: 10.1016/j.xpro.2022.101878. Epub 2023 Mar 2.
4
The early history of the eye-antennal disc of Drosophila melanogaster.果蝇眼触角盘的早期历史。
Genetics. 2022 May 5;221(1). doi: 10.1093/genetics/iyac041.
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Twelve years of SAMtools and BCFtools.SAMtools 和 BCFtools 十二年。
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Separate Polycomb Response Elements control chromatin state and activation of the vestigial gene.独立的多梳反应元件控制着残余基因的染色质状态和激活。
PLoS Genet. 2019 Aug 19;15(8):e1007877. doi: 10.1371/journal.pgen.1007877. eCollection 2019 Aug.
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The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads.Rsubread 软件包在 RNA 测序reads 的比对和定量方面,具有更简单、更快、更便宜和更好的优势。
Nucleic Acids Res. 2019 May 7;47(8):e47. doi: 10.1093/nar/gkz114.
9
Eyeless/Pax6 initiates eye formation non-autonomously from the peripodial epithelium.无眼/Pax6 基因从体壁外胚层非自主地启动眼睛的形成。
Development. 2018 Aug 2;145(15):dev163329. doi: 10.1242/dev.163329.
10
Polycomb group (PcG) proteins and Pax6 cooperate to inhibit reprogramming of the developing eye.多梳蛋白(PcG)家族蛋白和 Pax6 合作抑制发育中眼睛的重编程。
Development. 2018 Apr 4;145(7):dev160754. doi: 10.1242/dev.160754.