Lu Baosai, Wu Jin, Niu Yalin, Yin Yuewei, Zhao Chenming
Department of Urology, The Second Hospital of Hebei Medical University, Shijiazhuang, China.
Medicine (Baltimore). 2025 Jul 4;104(27):e43052. doi: 10.1097/MD.0000000000043052.
Renal cell carcinoma (RCC) is one of the most common tumors of the urinary system, and its outcomes vary widely among individuals, primarily due to different molecular characteristics. Both 5-methylcytosine (m5C) methylation and long noncoding RNAs (lncRNAs) play crucial roles in the epigenetics of RCC and may serve as biomarkers for predicting prognosis. Clinical information and transcriptome data of patients with RCC were extracted from the The Cancer Genome Atlas database. Using least absolute shrinkage and selection operator analysis and multivariate Cox regression, m5C-related lncRNAs were filtered. We then built a prognostic prediction model based on m5C-related lncRNAs. The model was analyzed for its predictive role in overall survival (OS) and response to targeted and immunotherapeutic treatments. We selected 3 lncRNAs, HM13-IT1, COLCA1, and AC010285.3, to construct a predictive model that categorizes patients into high-risk and low-risk groups. The results indicated that the high-risk group exhibited a significantly poorer OS than the low-risk group, and upon validation, it was identified as an independent risk factor. Through gene ontology enrichment analysis, this model was found to be closely associated with tumor immune function. The high-risk group showed higher tumor mutation burden and tumor immune dysfunction and exclusion scores, suggesting poorer response to immunotherapy. Additionally, the high-risk group exhibited reduced responsiveness to sorafenib. The predictive model for RCC can accurately forecast the prognosis of RCC, offering new tools for personalized diagnosis and treatment of individual patients.
肾细胞癌(RCC)是泌尿系统最常见的肿瘤之一,其个体预后差异很大,主要是由于分子特征不同。5-甲基胞嘧啶(m5C)甲基化和长链非编码RNA(lncRNA)在RCC的表观遗传学中都起着关键作用,并且可能作为预测预后的生物标志物。从癌症基因组图谱数据库中提取RCC患者的临床信息和转录组数据。使用最小绝对收缩和选择算子分析以及多变量Cox回归,筛选出与m5C相关的lncRNA。然后我们基于与m5C相关的lncRNA构建了一个预后预测模型。分析该模型在总生存期(OS)以及对靶向治疗和免疫治疗反应方面的预测作用。我们选择了3个lncRNA,即HM13-IT1、COLCA1和AC010285.3,构建一个将患者分为高风险和低风险组的预测模型。结果表明,高风险组的OS明显比低风险组差,并且经验证,它被确定为一个独立的风险因素。通过基因本体富集分析,发现该模型与肿瘤免疫功能密切相关。高风险组显示出更高的肿瘤突变负担以及肿瘤免疫功能障碍和排除评分,表明对免疫治疗的反应较差。此外,高风险组对索拉非尼的反应性降低。RCC的预测模型可以准确预测RCC的预后,为个体患者的个性化诊断和治疗提供新工具。