Greene Eric, Muniz Richard, Yamamura Hiroki, Hoff Samuel E, Bajaj Priyanka, Lee D John, Thompson Erin M, Arada Angelika, Lee Gyun Min, Bonomi Massimiliano, Kollman Justin M, Fraser James S
Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA.
Department of Biochemistry. University of Washington, Seattle WA.
bioRxiv. 2025 Jul 6:2025.07.04.663231. doi: 10.1101/2025.07.04.663231.
To maintain metabolic homeostasis, enzymes must adapt to fluctuating nutrient levels through mechanisms beyond gene expression. Here, we demonstrate that human glutamine synthetase (GS) can reversibly polymerize into filaments aided by a composite binding site formed at the filament interface by the product, glutamine. Time-resolved cryo-electron microscopy (cryo-EM) confirms that glutamine binding stabilizes these filaments, which in turn exhibit reduced catalytic specificity for ammonia at physiological concentrations. This inhibition appears induced by a conformational change that remodulates the active site loop ensemble gating substrate entry. Metadynamics ensemble refinement revealed >10 Å conformational range for the active site loop and that the loop is stabilized by transient contacts. This disorder is significant, as we show that the transient contacts which stabilize this loop in a closed conformation are essential for catalysis both and in cells. We propose that GS filament formation constitutes a negative-feedback mechanism, directly linking product concentration to the structural and functional remodeling of the enzyme.
为维持代谢稳态,酶必须通过基因表达以外的机制来适应营养水平的波动。在此,我们证明人类谷氨酰胺合成酶(GS)可在由产物谷氨酰胺在细丝界面形成的复合结合位点的辅助下可逆地聚合成细丝。时间分辨冷冻电子显微镜(cryo-EM)证实谷氨酰胺结合可稳定这些细丝,而这些细丝在生理浓度下对氨的催化特异性降低。这种抑制作用似乎是由一种构象变化诱导的,该构象变化重新调节了控制底物进入的活性位点环系。元动力学系综精修揭示活性位点环的构象范围大于10 Å,且该环通过瞬时接触得以稳定。这种无序状态很重要,因为我们表明在封闭构象中稳定该环的瞬时接触对于体外和细胞内的催化作用均至关重要。我们提出GS细丝的形成构成一种负反馈机制,将产物浓度与酶的结构和功能重塑直接联系起来。