Skoupy Radim, Müller Elisabeth, Pennycook Timothy J, Guizar-Sicairos Manuel, Fabbri Emiliana, Poghosyan Emiliya
PSI Center for Life Sciences, Paul Scherrer Institute, PSI, Villigen, 5232, Switzerland.
EMAT, Department of Physics, University of Antwerp, Groenenborgerlaan 171, Antwerp, 2020, Belgium.
Sci Rep. 2025 Jul 10;15(1):24959. doi: 10.1038/s41598-025-09871-6.
Electron ptychography is a rapidly growing diffractive imaging technique providing superior image contrast, high resolution, efficient dose usage and versatile imaging conditions. Originally coming from the physical sciences, it has also become a method of interest in the life sciences. Regardless of the scientific field, the successful ptychographic reconstruction relies on various combinations of adjustable experimental parameters, along with the choice of the reconstruction algorithm. In this work we present ptychoScopy, a Python-based tool developed to simplify the selection of these parameters and aid successful experimental design. Using a [Formula: see text] sample, we show the influence of key parameters such as probe convergence angle, defocus and electron dose on the reconstruction quality using direct and iterative reconstruction algorithms. We investigate the influence of real and reciprocal space sampling and their influence on the speed and quality of ptychographic reconstructions. PtychoScopy simplifies experimental design and guides the researchers across diverse scientific fields in setting up successful ptychographic experiments.
电子叠层成像术是一种快速发展的衍射成像技术,具有出色的图像对比度、高分辨率、高效的剂量使用和多样的成像条件。它最初源于物理科学领域,如今也已成为生命科学领域备受关注的一种方法。无论在哪个科学领域,成功的叠层成像重建都依赖于可调整实验参数的各种组合,以及重建算法的选择。在这项工作中,我们展示了ptychoScopy,这是一个基于Python开发的工具,旨在简化这些参数的选择并助力成功的实验设计。使用一个[公式:见正文]样本,我们展示了诸如探针会聚角、散焦和电子剂量等关键参数对使用直接和迭代重建算法的重建质量的影响。我们研究了实空间和倒易空间采样的影响及其对叠层成像重建速度和质量的影响。PtychoScopy简化了实验设计,并指导不同科学领域的研究人员开展成功的叠层成像实验。