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单细胞空间转录组学揭示咪喹莫特诱导的小鼠狼疮性肾炎肾纤维化的致病机制。

Single-cell spatial transcriptomics reveals pathogenic mechanism of renal fibrosis in imiquimod-induced lupus nephritis in mice.

作者信息

Xing Yanan, An Yanru, Tian Tian, Pu Li, Lu Zhigang, Liang Ning, Liu Longqi, Shang Zhouchun

机构信息

College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China.

BGI Research, Shenzhen, 518083, China.

出版信息

Biochem Biophys Rep. 2025 Jun 23;43:102087. doi: 10.1016/j.bbrep.2025.102087. eCollection 2025 Sep.

DOI:10.1016/j.bbrep.2025.102087
PMID:40641741
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12242473/
Abstract

A deeper understanding of the cellular and molecular pathology pathways of renal fibrosis in lupus nephritis (LN) is essential for the accurate disease assessment and the development of novel therapeutic strategies. In this study, we employed advanced spatial transcriptomics technique to elucidate the underlying mechanism of renal fibrosis in mouse kidneys. By establishing single-nuclei and spatial transcriptomic maps for LN and control kidneys, we identified a significant activation and proliferation of fibroblasts predominantly in the inner stripe of outer medulla (ISOM) region and pinpointed a set of specific gene signatures associated with fibrosis. Furthermore, we discovered a class of pro-fibrotic macrophage subtype, Lyz2 macrophage, that promotes myofibroblast activation. We elucidated the intricate molecular interplay mechanisms involved in this process. Our study also delved into the glomerular region, revealed disease-induced alterations in gene expression and identified potential novel therapeutic targets.

摘要

深入了解狼疮性肾炎(LN)中肾纤维化的细胞和分子病理途径对于准确的疾病评估和新型治疗策略的开发至关重要。在本研究中,我们采用先进的空间转录组学技术来阐明小鼠肾脏中肾纤维化的潜在机制。通过建立LN和对照肾脏的单核和空间转录组图谱,我们发现主要在外髓质内带(ISOM)区域的成纤维细胞有显著激活和增殖,并确定了一组与纤维化相关的特定基因特征。此外,我们发现了一类促纤维化巨噬细胞亚型,即Lyz2巨噬细胞,它可促进肌成纤维细胞激活。我们阐明了该过程中涉及的复杂分子相互作用机制。我们的研究还深入探讨了肾小球区域,揭示了疾病诱导的基因表达变化,并确定了潜在的新型治疗靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40ae/12242473/bbf3fc7a742f/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40ae/12242473/1187f2b1ac51/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40ae/12242473/a353e7147b57/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40ae/12242473/201588e67131/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40ae/12242473/9727861884b8/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40ae/12242473/14c21c70625d/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40ae/12242473/bbf3fc7a742f/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40ae/12242473/1187f2b1ac51/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40ae/12242473/a353e7147b57/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40ae/12242473/201588e67131/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40ae/12242473/9727861884b8/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40ae/12242473/14c21c70625d/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40ae/12242473/bbf3fc7a742f/gr6.jpg

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本文引用的文献

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Sci Transl Med. 2024 Nov 27;16(775):eadl1666. doi: 10.1126/scitranslmed.adl1666.
2
Cluster of differentiation-44 as a novel biomarker of lupus nephritis and its role in kidney inflammation and fibrosis.CD44 作为狼疮肾炎的新型生物标志物及其在肾脏炎症和纤维化中的作用。
Front Immunol. 2024 Oct 1;15:1443153. doi: 10.3389/fimmu.2024.1443153. eCollection 2024.
3
Multiscale topology classifies cells in subcellular spatial transcriptomics.
多尺度拓扑在亚细胞空间转录组学中对细胞进行分类。
Nature. 2024 Jun;630(8018):943-949. doi: 10.1038/s41586-024-07563-1. Epub 2024 Jun 19.
4
The transcription factor ZEB2 drives the formation of age-associated B cells.转录因子 ZEB2 驱动与年龄相关的 B 细胞的形成。
Science. 2024 Jan 26;383(6681):413-421. doi: 10.1126/science.adf8531. Epub 2024 Jan 25.
5
FN1 and TGFBI are key biomarkers of macrophage immune injury in diabetic kidney disease.FN1 和 TGFBI 是糖尿病肾病中巨噬细胞免疫损伤的关键生物标志物。
Medicine (Baltimore). 2023 Nov 10;102(45):e35794. doi: 10.1097/MD.0000000000035794.
6
Immune landscape and the key role of APOE+ monocytes of lupus nephritis under the single-cell and spatial transcriptional vista.狼疮肾炎单细胞和空间转录景观下的免疫景观和 APOE+单核细胞的关键作用。
Clin Transl Med. 2023 Apr;13(4):e1237. doi: 10.1002/ctm2.1237.
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