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肾细胞癌中长链非编码RNA基因的转移特异性CpG岛DNA高甲基化

Metastasis-Specific CpG Island DNA Hypermethylation of the Long Non-Coding RNA Gene in Renal Cell Carcinoma.

作者信息

Faraj Tabrizi Pouriya, Schimansky Inga, Peters Inga, Hennenlotter Jörg, Tezval Hossein, Kuczyk Markus Antonius, Serth Jürgen

机构信息

Department of Urology and Urological Oncology, Hannover Medical School, 30625 Hannover, Germany.

Department of Hematology, Hemostaseology, Oncology and Stem Cell Transplantation, Hannover Medical School, 30625 Hannover, Germany.

出版信息

Cancers (Basel). 2025 Jun 30;17(13):2204. doi: 10.3390/cancers17132204.

DOI:10.3390/cancers17132204
PMID:40647502
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12249281/
Abstract

Alterations in long non-protein-coding RNAs (lncRNAs) are known to influence cellular proliferation, apoptosis, and metastasis in human cancers, including renal cell carcinoma (RCC). Using pyrosequencing, we analyzed DNA methylation (DNAm) at 23 loci within the CpG island across 28 human cancer cell line models, 181 RCC tumor tissues, 154 paired tumor-adjacent normal tissues (adNs), and 194 metastatic tissue samples. Our analysis revealed that all CpG sites exhibited tumor-specific hypermethylation (all ≤ 1.4 × 10). Moreover, primary RCC tissues with distant metastases (M1) and metastatic tissue samples (Mtx) showed significant hypermethylation compared to RCC without distant metastases (M0). Notably, DNAm in Mtx displayed a significant increase in 22 CpG sites, compared to 12 CpG sites in the M1/M0 comparison, suggesting that DNAm in Mtx differs both qualitatively and quantitatively. Given that elevated levels of DNAm were also observed in the majority of cell line models, our findings suggest that may play a pivotal role in the malignant development and progression of RCC metastasis, as well as in other human cancers.

摘要

已知长链非蛋白质编码RNA(lncRNA)的改变会影响包括肾细胞癌(RCC)在内的人类癌症中的细胞增殖、凋亡和转移。我们使用焦磷酸测序法分析了28种人类癌细胞系模型、181个RCC肿瘤组织、154对肿瘤邻近正常组织(adN)和194个转移组织样本中CpG岛内23个位点的DNA甲基化(DNAm)情况。我们的分析显示,所有CpG位点均表现出肿瘤特异性高甲基化(均≤1.4×10)。此外,与无远处转移的RCC(M0)相比,有远处转移的原发性RCC组织(M1)和转移组织样本(Mtx)显示出显著的高甲基化。值得注意的是,与M1/M0比较中的12个CpG位点相比,Mtx中的DNAm在22个CpG位点上显著增加,这表明Mtx中的DNAm在质量和数量上均有所不同。鉴于在大多数细胞系模型中也观察到DNAm水平升高,我们的研究结果表明,其可能在RCC转移以及其他人类癌症的恶性发展和进展中起关键作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a4ce/12249281/6a1cbfd4049b/cancers-17-02204-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a4ce/12249281/855e5e6c7dac/cancers-17-02204-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a4ce/12249281/3050d5240de6/cancers-17-02204-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a4ce/12249281/db014d9e9c72/cancers-17-02204-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a4ce/12249281/e1be488fa748/cancers-17-02204-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a4ce/12249281/6a1cbfd4049b/cancers-17-02204-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a4ce/12249281/855e5e6c7dac/cancers-17-02204-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a4ce/12249281/3050d5240de6/cancers-17-02204-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a4ce/12249281/db014d9e9c72/cancers-17-02204-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a4ce/12249281/e1be488fa748/cancers-17-02204-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a4ce/12249281/6a1cbfd4049b/cancers-17-02204-g005.jpg

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本文引用的文献

1
Identification of a Novel Renal Metastasis Associated CpG-Based DNA Methylation Signature (RMAMS).鉴定一种新型的肾转移相关基于 CpG 的 DNA 甲基化特征(RMAMS)。
Int J Mol Sci. 2022 Sep 23;23(19):11190. doi: 10.3390/ijms231911190.
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DNA Methylation in , , and Is Associated with Metastatic Disease in Renal Cell Carcinoma.肾细胞癌中[具体部位1]、[具体部位2]和[具体部位3]的DNA甲基化与转移性疾病相关。 (你原文中“ ,, and ”部分缺失具体信息,这里只能按格式补上)
Cancers (Basel). 2021 Dec 22;14(1):39. doi: 10.3390/cancers14010039.
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RNAInter v4.0: RNA interactome repository with redefined confidence scoring system and improved accessibility.
RNAInter v4.0:具有重新定义的置信度评分系统和改进的可访问性的 RNA 相互作用组知识库。
Nucleic Acids Res. 2022 Jan 7;50(D1):D326-D332. doi: 10.1093/nar/gkab997.
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Long noncoding RNAs in cancer metastasis.长非编码 RNA 在癌症转移中的作用。
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LNCcation: lncRNA localization and function.定位:长链非编码 RNA 的定位和功能。
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lncRNA involvement in cancer stem cell function and epithelial-mesenchymal transitions.lncRNA 参与癌症干细胞功能和上皮-间充质转化。
Semin Cancer Biol. 2021 Oct;75:38-48. doi: 10.1016/j.semcancer.2020.12.012. Epub 2020 Dec 17.
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Whole-exome sequencing identified mutational profile of a case with T-cell chronic lymphocytic leukemia.全外显子组测序确定了一例T细胞慢性淋巴细胞白血病患者的突变谱。
Clin Case Rep. 2020 Jul 30;8(11):2251-2254. doi: 10.1002/ccr3.3149. eCollection 2020 Nov.
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Age-, tumor-, and metastatic tissue-associated DNA hypermethylation of a T-box brain 1 locus in human kidney tissue.人类肾组织中 T 盒脑 1 基因座的年龄、肿瘤和转移组织相关的 DNA 高甲基化。
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