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水稻中WRKY转录因子的全基因组鉴定与表达分析揭示了参与耐盐性的候选基因

Genome-Wide Identification and Expression Analysis of in Reveals Candidates Involved in Salt Tolerance.

作者信息

He Peiyang, Huang Lifan, Cai Hanyang

机构信息

College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China.

Jinshan College, Fujian Agriculture and Forestry University, Fuzhou 350002, China.

出版信息

Plants (Basel). 2025 Jun 23;14(13):1930. doi: 10.3390/plants14131930.

Abstract

Aspartic proteases (APs) are among the four primary families of proteolytic enzymes found in plants, and they are essential for both stress response mechanisms and developmental activities. While the gene family has been studied in model plants like , its characterization in woody species-particularly in extremophytes like , remains limited. Moreover, the potential involvement of in salt tolerance mechanisms in trees is yet to be explored. In this research, 55 APs were discovered and categorized into three distinct classes based on their conserved protein structures. The phylogenetic analysis revealed potential functions of genes derived from , , and . Our findings indicate that possesses a well-conserved evolutionary background and contains numerous highly variable regions, making it an excellent candidate for the identification and systematic examination of woody trees. Additionally, motifs frequently found in aspartic proteases within the genome of may be linked to functional s. It appears that are associated with specific gene functions. These genes are influenced by cis-elements, which may play a role in their responsiveness to phytohormone, stress adaptation maybe changed to these genes are regulated by cis-elements that may mediate their responsiveness to phytohormones, abiotic stress, and developmental cues. Our research offers the initial comprehensive analysis of the family in , emphasizing its potential functions in adapting to salt conditions. The findings uncover candidate for genetic engineering to enhance salinity tolerance in woody crops.

摘要

天冬氨酸蛋白酶(APs)是植物中发现的四大主要蛋白水解酶家族之一,对胁迫响应机制和发育活动都至关重要。虽然该基因家族已在拟南芥等模式植物中得到研究,但其在木本物种中的特征,特别是在胡杨等极端植物中的特征,仍然有限。此外,APs在树木耐盐机制中的潜在作用尚待探索。在本研究中,发现了55种APs,并根据其保守的蛋白质结构将其分为三个不同的类别。系统发育分析揭示了胡杨、毛果杨和美洲黑杨中APs基因的潜在功能。我们的研究结果表明,胡杨具有保守的进化背景,包含许多高度可变区域,使其成为鉴定和系统研究木本树木的优秀候选对象。此外,胡杨基因组中天冬氨酸蛋白酶中常见的基序可能与功能相关。似乎APs与特定的基因功能有关。这些基因受顺式作用元件影响,顺式作用元件可能在其对植物激素的反应中发挥作用,应激适应性的改变可能是因为这些基因受顺式作用元件调控,而顺式作用元件可能介导它们对植物激素、非生物胁迫和发育信号的反应。我们的研究首次对胡杨中的APs家族进行了全面分析,强调了其在适应盐胁迫条件下的潜在功能。研究结果揭示了用于基因工程以提高木本作物耐盐性的候选APs。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8cfb/12252427/0c0ac4ee0501/plants-14-01930-g001.jpg

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