Rebuttal letter of the "comment on "contrastive pre-training and 3D convolution neural network for RNA and small molecule binding affinity prediction" by Sun and Gao".
作者信息
Sun Saisai
机构信息
School of Computer Science and Technology, Xidian University, Xi'an, Shaanxi 710071, China.
出版信息
Bioinformatics. 2025 Jul 1;41(7). doi: 10.1093/bioinformatics/btaf164.
Abstract
摘要
相似文献
1
Rebuttal letter of the "comment on "contrastive pre-training and 3D convolution neural network for RNA and small molecule binding affinity prediction" by Sun and Gao".对孙和高所著的《关于“用于RNA和小分子结合亲和力预测的对比预训练与3D卷积神经网络”的评论》的反驳信
Bioinformatics. 2025 Jul 1;41(7). doi: 10.1093/bioinformatics/btaf164.
2
Comment on "Contrastive pre-training and 3D convolution neural network for RNA and small molecule binding affinity prediction" by Sun and Gao.对孙和高所著的《用于RNA和小分子结合亲和力预测的对比预训练和3D卷积神经网络》的评论
Bioinformatics. 2025 Jun 2;41(6). doi: 10.1093/bioinformatics/btaf163.
3
AffiGrapher: Contrastive Heterogeneous Graph Learning with Aromatic Virtual Nodes for RNA-Small Molecule Binding Affinity Prediction.AffiGrapher：用于RNA-小分子结合亲和力预测的带芳香虚拟节点的对比异质图学习
J Chem Inf Model. 2025 Jul 14;65(13):7263-7276. doi: 10.1021/acs.jcim.5c00798. Epub 2025 Jun 26.
4
Contrastive pre-training and 3D convolution neural network for RNA and small molecule binding affinity prediction.基于对比预训练和 3D 卷积神经网络的 RNA 和小分子结合亲和力预测。
Bioinformatics. 2024 Mar 29;40(4). doi: 10.1093/bioinformatics/btae155.
5
Neural network dose prediction for cervical brachytherapy: Overcoming data scarcity for applicator-specific models.神经网络在宫颈癌近距离治疗中的剂量预测：克服施源器特异性模型的数据匮乏问题。
Med Phys. 2024 Jul;51(7):4591-4606. doi: 10.1002/mp.17230. Epub 2024 May 30.
6
Automated instance segmentation and registration of spinal vertebrae from CT-Scans with an improved 3D U-net neural network and corner point registration.使用改进的3D U-net神经网络和角点配准技术对CT扫描图像中的脊椎进行自动实例分割和配准。
Comput Biol Med. 2025 Sep;196(Pt A):110663. doi: 10.1016/j.compbiomed.2025.110663. Epub 2025 Jul 8.
7
Self-Supervised Contrastive Learning for Medical Time Series: A Systematic Review.自监督对比学习在医学时间序列中的应用：系统综述。
Sensors (Basel). 2023 Apr 23;23(9):4221. doi: 10.3390/s23094221.
8
A Contrastive Learning-Enhanced Residual Network for Predicting Epileptic Seizures Using EEG Signals.一种用于利用脑电图信号预测癫痫发作的对比学习增强残差网络。
Int J Neural Syst. 2025 Jul 16:2550050. doi: 10.1142/S0129065725500509.
9
A sequential recommendation method using contrastive learning and Wasserstein self-attention mechanism.一种使用对比学习和瓦瑟斯坦自注意力机制的序列推荐方法。
PeerJ Comput Sci. 2025 Mar 26;11:e2749. doi: 10.7717/peerj-cs.2749. eCollection 2025.
10
TAC-ECG: A task-adaptive classification method for electrocardiogram based on cross-modal contrastive learning and low-rank convolutional adapter.TAC-ECG：一种基于跨模态对比学习和低秩卷积适配器的心电图任务自适应分类方法。
Comput Methods Programs Biomed. 2025 Oct;270:108918. doi: 10.1016/j.cmpb.2025.108918. Epub 2025 Jul 5.
本文引用的文献
1
Contrastive pre-training and 3D convolution neural network for RNA and small molecule binding affinity prediction.基于对比预训练和 3D 卷积神经网络的 RNA 和小分子结合亲和力预测。
Bioinformatics. 2024 Mar 29;40(4). doi: 10.1093/bioinformatics/btae155.
2
Reliable method for predicting the binding affinity of RNA-small molecule interactions using machine learning.利用机器学习预测 RNA-小分子相互作用结合亲和力的可靠方法。
Brief Bioinform. 2024 Jan 22;25(2). doi: 10.1093/bib/bbae002.
3
Discovery of small molecules that target a tertiary-structured RNA.靶向三级结构 RNA 的小分子的发现。
Proc Natl Acad Sci U S A. 2022 Nov 29;119(48):e2213117119. doi: 10.1073/pnas.2213117119. Epub 2022 Nov 21.
4
RNA approaches the B-form in stacked single strand dinucleotide contexts.在堆叠的单链二核苷酸环境中，RNA接近B型结构。
Biopolymers. 2016 Feb;105(2):65-82. doi: 10.1002/bip.22750.
5
The PDBbind database: collection of binding affinities for protein-ligand complexes with known three-dimensional structures.PDBbind数据库：具有已知三维结构的蛋白质-配体复合物结合亲和力的集合。
J Med Chem. 2004 Jun 3;47(12):2977-80. doi: 10.1021/jm030580l.
6
Interlocking structural motifs mediate molecular discrimination by a theophylline-binding RNA.互锁结构基序介导茶碱结合RNA的分子识别。
Nat Struct Biol. 1997 Aug;4(8):644-9. doi: 10.1038/nsb0897-644.
7
High-resolution molecular discrimination by RNA.通过RNA进行高分辨率分子鉴别
Science. 1994 Mar 11;263(5152):1425-9. doi: 10.1126/science.7510417.
Zotero 插件