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孤立性轴后多指畸形相关基因细胞尾端的一种新型变异体。

A Novel Variant in the Cyto-Tail of Gene Underlying Isolated Postaxial Polydactyly.

作者信息

Javed Khan Muhammad, Khan Hammal, Zaman Atteaya, Ahmed Sohail, Iqbal Palwasha, Bilal Muhammad, Ullah Kifayat, Hasni Muhammad Sharif, Ullah Imran, Mis Emily Kathryn, Lakhani Saquib Ali, Ahmad Wasim

机构信息

Institute of Biochemistry, University of Balochistan, Quetta, Pakistan.

Department of Biochemistry, Faculty of Biological Sciences, Quaid-i-Azam University Islamabad, Islamabad, Pakistan.

出版信息

Mol Syndromol. 2024 Dec;15(6):443-449. doi: 10.1159/000539279. Epub 2024 Jun 20.

DOI:10.1159/000539279
PMID:40657133
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12246549/
Abstract

BACKGROUND

Polydactyly is one of the most common hereditary limb malformations, characterized by presence of additional digits in hands and/or feet. It is present either in isolated form or in combination with other features. Preaxial polydactyly with extra digit on the outside of the thumb or big toe, and postaxial polydactyly with extra digit on the outside of the little finger or little toe are the two main forms of polydactyly.

METHODS AND RESULTS

In the present study, two unrelated consanguineous families segregating PAP in an autosomal recessive manner were investigated. Whole exome sequencing, followed by segregation analysis using Sanger sequencing, revealed a homozygous missense variant [c.1792 G>A; p.(Gly598Arg); NM_005631.5] in the in both families Proteins SMO, PTCH, and GLI act as major components of the Sonic hedgehog pathway, which transmits signals to embryonic cells for cellular differentiation. Homology modeling revealed that the variant in SMO may disrupt proper protein folding and interaction with other molecules.

CONCLUSION

Our study has revealed the second direct involvement of a sequence variant in the causing isolated polydactyly. This study will highlight the importance of the inclusion of the gene in screening individuals presenting polydactyly in hands and feet.

摘要

背景

多指(趾)畸形是最常见的遗传性肢体畸形之一,其特征是手和/或足部出现额外的手指或脚趾。它可以以孤立的形式存在,也可以与其他特征合并出现。拇指或大脚趾外侧有额外手指的轴前多指(趾)畸形,以及小手指或小脚趾外侧有额外手指的轴后多指(趾)畸形是多指(趾)畸形的两种主要形式。

方法与结果

在本研究中,对两个以常染色体隐性方式分离轴前多指(趾)畸形(PAP)的无血缘关系的近亲家庭进行了调查。全外显子组测序,随后使用桑格测序进行分离分析,在两个家庭中均发现了SMO基因中的一个纯合错义变异[c.1792 G>A;p.(Gly598Arg);NM_005631.5]。蛋白质SMO、PTCH和GLI是音猬因子信号通路的主要组成部分,该信号通路将信号传递给胚胎细胞以进行细胞分化。同源建模显示,SMO基因中的变异可能会破坏蛋白质的正确折叠以及与其他分子的相互作用。

结论

我们的研究揭示了SMO基因序列变异第二次直接导致孤立性多指(趾)畸形。这项研究将突出在筛查手足多指(趾)畸形个体时纳入SMO基因的重要性。

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本文引用的文献

1
Variants in EFCAB7 underlie nonsyndromic postaxial polydactyly.EFCAB7 基因变异与非综合征性轴后多指畸形相关。
Eur J Hum Genet. 2023 Nov;31(11):1270-1274. doi: 10.1038/s41431-023-01450-5. Epub 2023 Sep 8.
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A variant in the LDL receptor-related protein encoding gene LRP4 underlying polydactyly and phalangeal synostosis in a family of Pakistani origin.一个 LDL 受体相关蛋白编码基因 LRP4 的变异导致巴基斯坦裔家族的多指和指骨融合。
Congenit Anom (Kyoto). 2023 Nov;63(6):190-194. doi: 10.1111/cga.12536. Epub 2023 Aug 10.
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Identification of a Novel Large Deletion through Copy Number Variant Analysis from Whole-Exome Sequencing Data of a Patient with Postaxial Polydactyly Type A7.通过对一名A7型轴后多指畸形患者全外显子测序数据进行拷贝数变异分析鉴定出一种新型大片段缺失。
Mol Syndromol. 2023 Jun;14(3):225-230. doi: 10.1159/000527777. Epub 2023 Jan 13.
4
Genetic overview of postaxial polydactyly: Updated classification.轴后多指畸形的遗传学概述:更新后的分类
Clin Genet. 2023 Jan;103(1):3-15. doi: 10.1111/cge.14224. Epub 2022 Oct 2.
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A splice site variant in TCTN3 underlies an atypical form of orofaciodigital syndrome IV.TCTN3 中的剪接位点变异是 IV 型口腔面指(趾)综合征的一种非典型形式的基础。
Ann Hum Genet. 2022 Nov;86(6):291-296. doi: 10.1111/ahg.12462. Epub 2022 Aug 30.
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Case Report: Prenatal Diagnosis of Postaxial Polydactyly With Bi-Allelic Variants in Smoothened (SMO).病例报告:通过平滑蛋白(SMO)双等位基因变异进行轴后多指畸形的产前诊断。
Front Genet. 2022 Jun 22;13:887082. doi: 10.3389/fgene.2022.887082. eCollection 2022.
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Molecular Bases of Human Malformation Syndromes Involving the SHH Pathway: GLIA/R Balance and Cardinal Phenotypes.涉及 SHH 通路的人类畸形综合征的分子基础:神经胶质/神经元平衡和主要表型。
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Greig Cephalopolysyndactyly Syndrome: Phenotypic Variability Associated with Variants in Two Different Domains of GLI3.Greig头多指(趾)综合征:与GLI3两个不同结构域变异相关的表型变异性
Klin Padiatr. 2021 Mar;233(2):53-58. doi: 10.1055/a-1223-2489. Epub 2020 Dec 18.
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