来自法国贝雷泻湖海洋沉积物的. 菌株1Nfss2.1的全基因组序列。
Complete genome sequence of . strain 1Nfss2.1 from marine sediments of the Berre lagoon, France.
作者信息
Bartoli Manon, Pradel Nathalie, Fouteau Stéphanie, Rouy Zoé, Cruaud Corinne, Nadalig Thierry, Vallenet David, Oliveira Pedro H, Hirschler-Réa Agnès
机构信息
Aix Marseille Univ, Université de Toulon, CNRS, IRD, MIO, Marseille, France.
Génomique Métabolique, Genoscope, Institut François Jacob, Commissariat à l'Energie Atomique (CEA), CNRS, Université Evry, Université Paris-Saclay, Gif-sur-Yvette, France.
出版信息
Microbiol Resour Announc. 2025 Aug 14;14(8):e0025425. doi: 10.1128/mra.00254-25. Epub 2025 Jul 14.
Abstract
We report the complete genome sequence of . strain 1Nfss2.1, isolated from coastal marine sediments of the Berre lagoon, France. The genome consists of a 4,097,693-bp circular chromosome. It contains the genes involved in the Cmu chloromethane degradation pathway.
摘要
我们报告了从法国贝雷泻湖沿海海洋沉积物中分离出的菌株1Nfss2.1的完整基因组序列。该基因组由一条4,097,693碱基对的环状染色体组成。它包含参与Cmu氯甲烷降解途径的基因。
相似文献
1
Complete genome sequence of . strain 1Nfss2.1 from marine sediments of the Berre lagoon, France.来自法国贝雷泻湖海洋沉积物的. 菌株1Nfss2.1的全基因组序列。
Microbiol Resour Announc. 2025 Aug 14;14(8):e0025425. doi: 10.1128/mra.00254-25. Epub 2025 Jul 14.
2
Complete genome sequence of Alteromonas sp. OM2203, a marine bacterium degrading Ulva prolifera polysaccharides.降解浒苔多糖的海洋细菌交替单胞菌属OM2203的全基因组序列
Mar Genomics. 2025 Aug 15;82:101198. doi: 10.1016/j.margen.2025.101198. Epub 2025 May 16.
3
Complete genome sequence of the chloromethane-degrading Hyphomicrobium sp. strain MC1.氯甲烷降解菌 Hyphomicrobium sp. 菌株 MC1 的全基因组序列
J Bacteriol. 2011 Sep;193(18):5035-6. doi: 10.1128/JB.05627-11.
4
Microbially-driven nitrous oxide transformations and fluxes in organic-poor sediments from a tropical lagoon.热带泻湖贫有机沉积物中微生物驱动的一氧化二氮转化与通量
Mar Environ Res. 2025 Sep;210:107256. doi: 10.1016/j.marenvres.2025.107256. Epub 2025 May 29.
5
Complete genome sequence of sp. strain C-4077, isolated from the cell surface of a symbiotic dinoflagellate of the bivalve sp.从双壳贝类共生甲藻的细胞表面分离得到的sp.菌株C-4077的全基因组序列
Microbiol Resour Announc. 2025 Sep 11;14(9):e0035825. doi: 10.1128/mra.00358-25. Epub 2025 Aug 11.
6
Insights into the bacterial fraction of sediments from the South China Sea: physiological, chemotaxonomic, and genomic characterization of seven novel members of the family.对南海沉积物细菌组分的见解：该科七个新成员的生理、化学分类和基因组特征
Front Microbiol. 2025 Jul 4;16:1553679. doi: 10.3389/fmicb.2025.1553679. eCollection 2025.
7
Characterization of spp. isolated from root nodules of (white sweet clover) grown in Canada and description of sp. nov.从加拿大种植的草木樨（白花草木樨）根瘤中分离出的[具体物种]的特征描述及新种[具体物种]的描述
Int J Syst Evol Microbiol. 2025 Aug;75(8). doi: 10.1099/ijsem.0.006876.
8
Complete genome sequence of Pseudoalteromonas lipolytica M7NS11, a chitinolytic bacterium isolated from the New Britain Trench.从新不列颠海沟分离出的解几丁质细菌——解脂假交替单胞菌M7NS11的全基因组序列
Mar Genomics. 2025 Aug 15;82:101203. doi: 10.1016/j.margen.2025.101203. Epub 2025 Jul 28.
9
Complete genome sequence of sp. strain NKBG15041-a fast-growing marine .sp. 菌株NKBG15041的全基因组序列——一种快速生长的海洋菌。
Microbiol Resour Announc. 2025 Sep 11;14(9):e0056025. doi: 10.1128/mra.00560-25. Epub 2025 Jul 31.
10
A hotspot of diversity: novel species isolated from Baltic Sea sediments delineate a sympatric species complex.多样性热点：从波罗的海沉积物中分离出的新型物种勾勒出一个同域物种复合体。
Int J Syst Evol Microbiol. 2024 Aug;74(8). doi: 10.1099/ijsem.0.006480.
本文引用的文献
1
How low can you go? Short-read polishing of Oxford Nanopore bacterial genome assemblies.能降到多低？牛津纳米孔细菌基因组组装的短读补洞。
Microb Genom. 2024 Jun;10(6). doi: 10.1099/mgen.0.001254.
2
Hyphomicrobium album sp. nov., isolated from mountain soil and emended description of genus Hyphomicrobium.微白黄单胞菌新种，分离自山地土壤及微白黄单胞菌属描述的修正。
Arch Microbiol. 2021 Dec;203(10):5931-5936. doi: 10.1007/s00203-021-02473-6. Epub 2021 Oct 28.
3
MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis.微镜：一个通过基因组、泛基因组和代谢比较分析对微生物基因功能进行注释和探索的集成平台。
Nucleic Acids Res. 2020 Jan 8;48(D1):D579-D589. doi: 10.1093/nar/gkz926.
4
Assembly of long, error-prone reads using repeat graphs.使用重复图组装长的、易错的读取。
Nat Biotechnol. 2019 May;37(5):540-546. doi: 10.1038/s41587-019-0072-8. Epub 2019 Apr 1.
5
Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition.从 Tara Oceans 考察中获得的病毒到后生动物海洋浮游生物核苷酸序列。
Sci Data. 2017 Aug 1;4:170093. doi: 10.1038/sdata.2017.93.
6
Distribution and risk assessment of hydrocarbons (aliphatic and PAHs), polychlorinated biphenyls (PCBs), and pesticides in surface sediments from an agricultural river (Durance) and an industrialized urban lagoon (Berre lagoon), France.法国一条农业河流（迪朗斯河）和一个工业化城市泻湖（贝雷泻湖）表层沉积物中碳氢化合物（脂肪烃和多环芳烃）、多氯联苯（PCBs）及农药的分布与风险评估
Environ Monit Assess. 2015 Sep;187(9):591. doi: 10.1007/s10661-015-4823-9. Epub 2015 Aug 27.
7
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.CheckM：评估从分离株、单细胞和宏基因组中获得的微生物基因组质量。
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
8
A serum bottle modification of the Hungate technique for cultivating obligate anaerobes.用于培养专性厌氧菌的亨盖特技术的血清瓶改良法。
Appl Microbiol. 1974 May;27(5):985-7. doi: 10.1128/am.27.5.985-987.1974.
9
Methanogens: reevaluation of a unique biological group.产甲烷菌：对一个独特生物类群的重新评估。
Microbiol Rev. 1979 Jun;43(2):260-96. doi: 10.1128/mr.43.2.260-296.1979.
Zotero 插件