Wang Jiahui, Nikoubashman Arash, Kim Young C, Mittal Jeetain
bioRxiv. 2025 Jun 10:2025.06.09.658693. doi: 10.1101/2025.06.09.658693.
The morphology of biomolecular condensates plays a critical role in regulating intracellular organization and function by enabling both spatial and temporal control over biochemical processes. Recent studies have shown that small-molecule cosolutes can not only modulate phase separation but also influence condensate morphology. However, the mechanistic understanding of how small molecules regulate condensate structure remains limited. In this study, we employ coarse-grained molecular dynamics simulations to investigate how the morphology of two-component condensates can be modulated through the introduction of additional small-molecule cosolutes. By systematically varying the interaction strengths between the small molecules and the macromolecular components, we observe morphological transitions between, e.g., core-shell and dewetted structures. To rationalize these transitions, we calculate second virial coefficients in the presence of the small molecules, providing a molecular-level framework to capture shifts in effective homotypic and heterotypic interactions. We further investigate the role of stoichiometry between the small molecules and macromolecules, demonstrating that stoichiometry and interaction strength jointly determine the condensate morphology by altering the relative interaction strengths among components. Additionally, we show that fully miscible two-component condensates can undergo transitions to microphase-separated morphologies, such as core-shell or dewetted, upon small molecule introduction. Together, these findings reveal that condensate morphology can be rationally tuned through interaction- and stoichiometry-dependent mechanisms, offering molecular-scale insights into how small-molecule cosolutes modulate condensate structure.
生物分子凝聚物的形态通过对生化过程实现空间和时间控制,在调节细胞内组织和功能方面发挥着关键作用。最近的研究表明,小分子共溶质不仅可以调节相分离,还能影响凝聚物形态。然而,对于小分子如何调节凝聚物结构的机制理解仍然有限。在本研究中,我们采用粗粒度分子动力学模拟来研究如何通过引入额外的小分子共溶质来调节两组分凝聚物的形态。通过系统地改变小分子与大分子组分之间的相互作用强度,我们观察到了例如核壳结构和去湿结构之间的形态转变。为了解释这些转变,我们计算了存在小分子时的第二维里系数,提供了一个分子水平的框架来捕捉有效同型和异型相互作用的变化。我们进一步研究了小分子与大分子之间化学计量的作用,证明化学计量和相互作用强度通过改变组分之间的相对相互作用强度共同决定凝聚物形态。此外,我们表明,完全互溶的两组分凝聚物在引入小分子后可以转变为微相分离形态,如核壳或去湿形态。总之,这些发现揭示了凝聚物形态可以通过依赖于相互作用和化学计量学的机制进行合理调控,为小分子共溶质如何调节凝聚物结构提供了分子尺度的见解。