Li Yun, Paulussen Felix M, Grossmann Tom N
Department of Chemistry and Pharmaceutical Sciences, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Amsterdam Institute of Molecular and Life Sciences, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Methods Mol Biol. 2025;2934:41-56. doi: 10.1007/978-1-0716-4578-9_4.
Protein-protein interactions (PPIs) are crucial in many diseases but are often considered "undruggable," in particular when involving intracellular proteins. Frequently, their large, shallow surfaces cannot be engaged by classic small molecules. Instead, peptide-based approaches have shown promise, offering antibody-like surface recognition with improved cellular uptake. Notably, structurally highly relevant, β-sheet-derived hairpins have not been much explored as PPI inhibitors. These structures, consisting of antiparallel β-strands connected by short turns, are stabilized by interstrand hydrogen bonds and turn-inducing amino acids. Stabilized and cyclic versions potentially have superior binding and uptake properties. This chapter examines strategies for stabilizing β-hairpins, including β-turn design, macrocyclization, and crosslinking, to enhance not only their binding affinity but also cellular uptake and biostability.
蛋白质-蛋白质相互作用(PPI)在许多疾病中都至关重要,但通常被认为是“不可成药的”,尤其是当涉及细胞内蛋白质时。通常,它们大而浅的表面无法被经典小分子所作用。相反,基于肽的方法已显示出前景,可提供类似抗体的表面识别并改善细胞摄取。值得注意的是,结构高度相关的β-折叠衍生发夹作为PPI抑制剂尚未得到充分探索。这些结构由通过短转角连接的反平行β-链组成,通过链间氢键和诱导转角的氨基酸得以稳定。稳定的环状形式可能具有优异的结合和摄取特性。本章探讨了稳定β-发夹的策略,包括β-转角设计、大环化和交联,以不仅增强其结合亲和力,还提高细胞摄取和生物稳定性。