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转录开启和关闭时期的保守耦合是爆发动力学的基础。

A conserved coupling of transcriptional ON and OFF periods underlies bursting dynamics.

作者信息

Chen Po-Ta, Levo Michal, Zoller Benjamin, Gregor Thomas

机构信息

Joseph Henry Laboratories of Physics & Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA.

Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY, USA.

出版信息

Nat Struct Mol Biol. 2025 Jul 15. doi: 10.1038/s41594-025-01615-4.

Abstract

Transcription commonly occurs in bursts, with alternating productive (ON) and quiescent (OFF) periods determining mRNA production rates. However, how bursting dynamics regulate transcription is not well understood. Here, we conduct real-time measurements of endogenous transcriptional bursting with single-mRNA sensitivity. Using the diverse transcriptional activities present in early Drosophila embryos, we find stringent relationships between bursting parameters. Specifically, ON and OFF durations are tightly coupled, and each level of gene activity is associated with a characteristic combination of these periods. Lowly transcribing alleles primarily adjust OFF periods (burst frequency), while highly transcribing alleles tune ON periods (burst size). These relationships persist across developmental stages, body-axis positions, cis-regulatory or trans-regulatory perturbations and bursting dynamics observed in other species. Our findings suggest a mechanistic constraint that governs bursting dynamics, challenging the view that regulatory processes independently control distinct parameters.

摘要

转录通常以突发形式发生,活跃(开启)和静止(关闭)周期交替决定mRNA的产生速率。然而,突发动力学如何调控转录尚不清楚。在此,我们以单mRNA敏感性对内源转录突发进行实时测量。利用果蝇早期胚胎中存在的多种转录活性,我们发现突发参数之间存在严格的关系。具体而言,开启和关闭持续时间紧密耦合,并且每个基因活性水平都与这些周期的特定组合相关。低转录等位基因主要调整关闭周期(突发频率),而高转录等位基因则调整开启周期(突发大小)。这些关系在发育阶段、体轴位置、顺式调控或反式调控扰动以及在其他物种中观察到的突发动力学中都持续存在。我们的发现表明存在一种控制突发动力学的机制性限制,这对调控过程独立控制不同参数的观点提出了挑战。

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