人类蛋白质合成在校对过程中需要氨酰-tRNA 发生枢转。
Human Protein Synthesis Requires aminoacyl-tRNA Pivoting During Proofreading.
作者信息
Sapkota Divya, Sanbonmatsu Karissa Y, Girodat Dylan
机构信息
Department of Chemistry and Biochemistry, University of Arkansas, Fayetteville, Arkansas, 72701, USA.
Cellular and Molecular Biology Program, University of Arkansas, Fayetteville, Arkansas, 72701, USA.
出版信息
bioRxiv. 2025 Jun 26:2025.06.23.661150. doi: 10.1101/2025.06.23.661150.
Rigorous studies have characterized the aa-tRNA selection mechanism in bacteria, which is essential for maintaining translational fidelity. Recent investigations have identified critical distinctions in humans, such as the requirement of subunit rolling and a tenfold slower proofreading step. Although these studies captured key intermediates involved in tRNA selection, they did not elucidate the transitions of aa-tRNA between intermediates. Here, we simulated 1,856 aa-tRNA accommodation events into the human ribosomal A site, revealing the requirement of a distinct ~30° pivoting of aa-tRNA about the anticodon stem within the accommodation corridor. This pivoting is crucial for navigating the crowded accommodation corridor, which becomes more constrained due to subunit rolling. Subunit rolling-dependent crowding increases the steric contributions of the accommodation corridor during aa-tRNA accommodation, consistent with the 10-fold reduction in the rate of proofreading. The pivoting of the aa-tRNA enables precise alignment within the accommodation corridor, allowing it to traverse the narrower passage. Furthermore, we found that domain III of eEF1A interacts with the accommodating aa-tRNA through conserved basic residues, providing a steric block to prevent dissociation from the A site. Together, these findings provide a structural framework for understanding the distinctions between bacterial and human aa-tRNA selection and demonstrate that the alignment of the aa-tRNA relative to the ribosomal catalytic sites is a critical determinant of translational fidelity.
严谨的研究已经阐明了细菌中氨酰 - tRNA选择机制,这对于维持翻译保真度至关重要。最近的研究发现了人类中的关键差异,例如亚基滚动的必要性以及校对步骤慢十倍。尽管这些研究捕捉到了参与tRNA选择的关键中间体,但它们并未阐明氨酰 - tRNA在中间体之间的转变。在这里,我们模拟了1856次氨酰 - tRNA进入人核糖体A位点的容纳事件,揭示了氨酰 - tRNA在容纳通道内围绕反密码子茎进行约30°独特枢转的必要性。这种枢转对于在拥挤的容纳通道中导航至关重要,由于亚基滚动,该通道变得更加受限。亚基滚动依赖性拥挤增加了氨酰 - tRNA容纳期间容纳通道的空间贡献,这与校对速率降低10倍一致。氨酰 - tRNA的枢转使其能够在容纳通道内精确对齐,从而使其能够穿过更窄的通道。此外,我们发现eEF1A的结构域III通过保守的碱性残基与容纳的氨酰 - tRNA相互作用,提供空间阻碍以防止其从A位点解离。总之,这些发现为理解细菌和人类氨酰 - tRNA选择之间的差异提供了一个结构框架,并证明氨酰 - tRNA相对于核糖体催化位点的对齐是翻译保真度的关键决定因素。