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简易时钟:一款用于昼夜节律分析与可视化的用户友好型桌面应用程序。

easyClock: A User-Friendly Desktop Application for Circadian Rhythm Analysis and Visualization.

作者信息

Wu Binbin, Ja William W

机构信息

Department of Neuroscience, The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology, Jupiter, FL 33458, USA.

出版信息

bioRxiv. 2025 Jul 15:2025.07.08.663749. doi: 10.1101/2025.07.08.663749.

DOI:10.1101/2025.07.08.663749
PMID:40672292
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12265635/
Abstract

Circadian rhythms regulate a wide range of biological processes, and their precise characterization is essential for understanding behavioral and physiological fluctuations. However, existing tools to analyze circadian data often require coding expertise or rely on specific data acquisition software, limiting their general applicability. Here, we present easyClock, an intuitive and interactive application designed to streamline circadian rhythm analysis and visualization. The easyClock application enables simultaneous processing of multiple files, allowing users to preview, batch-analyze, and plot diverse sets of time series generated from high-throughput experiments. To enhance data analysis efficiency and provide comparable results, this application integrates four different analysis methods for handling data with various waveforms. Results are easily viewed and exported for any selected range of data. This free-to-use application is open-source and can be deployed on macOS computers by users without coding experience.

摘要

昼夜节律调节广泛的生物过程,对其进行精确表征对于理解行为和生理波动至关重要。然而,现有的分析昼夜节律数据的工具通常需要编码专业知识或依赖特定的数据采集软件,限制了它们的普遍适用性。在此,我们展示了easyClock,这是一个直观且交互式的应用程序,旨在简化昼夜节律分析和可视化。easyClock应用程序能够同时处理多个文件,允许用户预览、批量分析和绘制从高通量实验生成的各种时间序列集。为提高数据分析效率并提供可比结果,该应用程序集成了四种不同的分析方法来处理具有各种波形的数据。对于任何选定的数据范围,结果都易于查看和导出。这个免费使用的应用程序是开源的,没有编码经验的用户也可以在macOS计算机上进行部署。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5aa/12265635/da19bb6a64bc/nihpp-2025.07.08.663749v2-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5aa/12265635/7b91893b739a/nihpp-2025.07.08.663749v2-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5aa/12265635/05547d5d5649/nihpp-2025.07.08.663749v2-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5aa/12265635/da19bb6a64bc/nihpp-2025.07.08.663749v2-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5aa/12265635/7b91893b739a/nihpp-2025.07.08.663749v2-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5aa/12265635/05547d5d5649/nihpp-2025.07.08.663749v2-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5aa/12265635/da19bb6a64bc/nihpp-2025.07.08.663749v2-f0003.jpg

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本文引用的文献

1
Locomotor Activity Monitoring in Mice to Study the Phase Shift of Circadian Rhythms Using ClockLab (Actimetrics).使用ClockLab(Actimetrics)监测小鼠的运动活动以研究昼夜节律的相位偏移。
Bio Protoc. 2025 Feb 20;15(4):e5187. doi: 10.21769/BioProtoc.5187.
2
Multi-omics profiling reveals rhythmic liver function shaped by meal timing.多组学分析揭示了用餐时间塑造的节律性肝功能。
Nat Commun. 2023 Sep 29;14(1):6086. doi: 10.1038/s41467-023-41759-9.
3
The risks of using the chi-square periodogram to estimate the period of biological rhythms.
使用卡方周期图估计生物节律周期的风险。
PLoS Comput Biol. 2021 Jan 6;17(1):e1008567. doi: 10.1371/journal.pcbi.1008567. eCollection 2021 Jan.
4
CosinorPy: a python package for cosinor-based rhythmometry.CosinorPy:一个基于余弦分析的节律计量的 Python 包。
BMC Bioinformatics. 2020 Oct 29;21(1):485. doi: 10.1186/s12859-020-03830-w.
5
Regulation of circadian rhythm and sleep by miR-375-timeless interaction in Drosophila.miR-375- timeless 互作调控果蝇昼夜节律和睡眠
FASEB J. 2020 Dec;34(12):16536-16551. doi: 10.1096/fj.202001107R. Epub 2020 Oct 20.
6
RhythmicAlly: Your R and Shiny-Based Open-Source Ally for the Analysis of Biological Rhythms.RhythmicAlly:一款基于 R 和 Shiny 的开源生物节律分析工具。
J Biol Rhythms. 2019 Oct;34(5):551-561. doi: 10.1177/0748730419862474. Epub 2019 Jul 16.
7
Rethomics: An R framework to analyse high-throughput behavioural data.重新组学:一种用于分析高通量行为数据的 R 框架。
PLoS One. 2019 Jan 16;14(1):e0209331. doi: 10.1371/journal.pone.0209331. eCollection 2019.
8
LimoRhyde: A Flexible Approach for Differential Analysis of Rhythmic Transcriptome Data.LimoRhyde:一种灵活的节律转录组数据分析方法。
J Biol Rhythms. 2019 Feb;34(1):5-18. doi: 10.1177/0748730418813785. Epub 2018 Nov 25.
9
ShinyR-DAM: a program analyzing Drosophila activity, sleep and circadian rhythms.ShinyR-DAM:一个分析果蝇活动、睡眠和昼夜节律的程序。
Commun Biol. 2018;1:25. doi: 10.1038/s42003-018-0031-9. Epub 2018 Apr 5.
10
Simultaneous measurement of sleep and feeding in individual Drosophila.在单个果蝇中同时测量睡眠和进食情况。
Nat Protoc. 2017 Nov;12(11):2355-2366. doi: 10.1038/nprot.2017.096. Epub 2017 Oct 12.