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通过高通量流动模式拉曼激活细胞分选和多组学分析对富含脂质的酿酒酵母突变体进行无标记分离,以揭示脂质积累增强的机制。

Label-free isolation of lipid-rich Saccharomyces cerevisiae mutant by high-throughput flow-mode Raman-activated cell sorting and multi-omics analysis for uncovering the mechanism of enhanced lipid accumulation.

作者信息

Ji Xiaotong, Wang Xixian, Zhou Wenjun, Chen Lin, Liu Tianzhong, Xu Jian, Ma Bo

机构信息

Key Laboratory of Photoelectric Conversion and Utilization of Solar Energy, Key Laboratory of Shandong Energy Biological Genetic Resources, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Songling Rd 189, Qingdao, 266101, China.

Shandong Energy Institute, Songling Rd 189, Qingdao, 266101, China.

出版信息

Biotechnol Biofuels Bioprod. 2025 Jul 17;18(1):75. doi: 10.1186/s13068-025-02677-8.

Abstract

BACKGROUND

Palmitoleic acid, a valuable functional fatty acid, is notably scarce in traditional oil crops, with the exception of certain wild plants such as macadamia nuts and sea buckthorn. Recently, the lipid from Saccharomyces cerevisiae was found to contain approximately 50% palmitoleic acid. Consequently, S. cerevisiae has the potential to sustainably produce palmitoleic acid through fermentation, provided that the issue of promoting its lipid content is addressed.

RESULTS

In this work, based on the previously isolated oleaginous wild strain of S. cerevisiae, the mutagenesis by zeocin combined with ARTP was carried out to generate S. cerevisiae mutants, and then the high lipid content mutants were isolated using the flow-mode Raman-activated cell sorting (FlowRACS) technique, which allowed for the high-throughput selection of these mutants in a label-free and non-invasive manner. The mutant MU2R48 was finally obtained and its lipid content was 40.26%, 30.85% higher than the original type. Transcriptome and targeted metabolome analysis revealed a coordinated interaction of fatty acid precursor biosynthesis, the pentose phosphate pathway, ethanol degradation, and amino acid metabolism, synergistically channeling carbon flux from acetyl-CoA and NADPH into lipid biosynthesis. Additionally, key transcriptional regulators within the lipid metabolism network were implicated in this enhanced lipid accumulation.

CONCLUSION

In this study, a mutant strain of Saccharomyces cerevisiae MU2R48 with 40.26% lipid content was successfully generated through zeocin-ARTP mutagenesis combined with Raman-activated cell sorting. Multi-omics analysis revealed that the enhanced lipid accumulation was driven by coordinated up-regulation of precursor biosynthesis, carbon flux redirection, and key transcriptional regulators, with increased acetyl-CoA and NADPH production fluxes likely serving as the pivotal determinants.

摘要

背景

棕榈油酸是一种有价值的功能性脂肪酸,在传统油料作物中极为稀缺,某些野生植物如澳洲坚果和沙棘除外。最近发现,酿酒酵母的脂质中约含50%的棕榈油酸。因此,只要解决提高其脂质含量的问题,酿酒酵母就有潜力通过发酵可持续地生产棕榈油酸。

结果

在这项工作中,基于先前分离的产油酿酒酵母野生菌株,进行了博来霉素与常压室温等离子体(ARTP)结合的诱变以产生酿酒酵母突变体,然后使用流动模式拉曼激活细胞分选(FlowRACS)技术分离出高脂质含量突变体,该技术能够以无标记和非侵入性方式对这些突变体进行高通量筛选。最终获得了突变体MU2R48,其脂质含量为40.26%,比原始菌株高30.85%。转录组和靶向代谢组分析揭示了脂肪酸前体生物合成、磷酸戊糖途径、乙醇降解和氨基酸代谢之间的协同相互作用,协同将碳通量从乙酰辅酶A和NADPH引导至脂质生物合成。此外,脂质代谢网络中的关键转录调节因子与这种脂质积累增强有关。

结论

在本研究中,通过博来霉素 - ARTP诱变结合拉曼激活细胞分选成功产生了脂质含量为40.26%的酿酒酵母突变株MU2R48。多组学分析表明,脂质积累增强是由前体生物合成的协同上调、碳通量重定向和关键转录调节因子驱动的,乙酰辅酶A和NADPH产生通量的增加可能是关键决定因素。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05c9/12273373/38b29267f706/13068_2025_2677_Fig1_HTML.jpg

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