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塞氏单指鱼(真鲈形目,单指鱼科)新测序线粒体基因组的系统发育特征

Phylogenetic Characteristics of a Newly Sequenced Mitochondrial Genome of Monodactylus sebae (Eupercaria, Monodactylidae).

作者信息

Chen Xiao-Die, Sun Cheng-He, Lu Chang-Hu

机构信息

College of Life Sciences, Nanjing Forestry University, Nanjing, 210037, China.

出版信息

Biochem Genet. 2025 Jul 18. doi: 10.1007/s10528-025-11185-1.

Abstract

The African moony (Monodactylus sebae) occupies a unique ecological niche and possesses significant aesthetic value, playing a crucial role in aquatic ecosystems. To elucidate the phylogenetic position of the African moony within the family Monodactylidae, this study employed high-throughput sequencing technology to obtain the mitochondrial genome of the African moony. A phylogenetic tree was subsequently constructed based on 13 protein-coding genes. The mitochondrial DNA of the African moony spans a total length of 16,544 base pairs, encoding 22 transfer RNAs, 13 genes associated with protein synthesis, and 2 ribosomal RNAs, with an additional D-loop region. The genome exhibits a pronounced bias towards adenine-thymine (AT) nucleotides, particularly in the D-loop region, where the AT content reaches as high as 65.5%. Utilizing Bayesian inference and maximum likelihood methods to reconstruct the phylogenetic tree, the analysis revealed that the African moony (M. sebae) and the Silver moony (Monodactylus argenteus) form a monophyletic clade, indicating a close phylogenetic relationship. Moreover, the phylogenetic tree unveiled an early rapid radiation event in the evolution of Eupercaria, offering novel molecular insights into the mechanisms underlying fish biodiversity. This study not only enriches the mitochondrial genome database for fish species but also lays a vital foundation for the follow-up study on the adaptive evolution and conservation biology of the African moony.

摘要

非洲月鱼(Monodactylus sebae)占据着独特的生态位,具有重要的美学价值,在水生生态系统中发挥着关键作用。为了阐明非洲月鱼在月鱼科中的系统发育位置,本研究采用高通量测序技术获得了非洲月鱼的线粒体基因组。随后基于13个蛋白质编码基因构建了系统发育树。非洲月鱼的线粒体DNA全长16544个碱基对,编码22个转运RNA、13个与蛋白质合成相关的基因和2个核糖体RNA,还有一个D环区域。该基因组对腺嘌呤-胸腺嘧啶(AT)核苷酸有明显偏好,特别是在D环区域,其AT含量高达65.5%。利用贝叶斯推断和最大似然法重建系统发育树,分析表明非洲月鱼(M. sebae)和银月鱼(Monodactylus argenteus)形成一个单系类群,表明它们有密切的系统发育关系。此外,系统发育树揭示了真鲈形系进化过程中的一次早期快速辐射事件,为鱼类生物多样性的潜在机制提供了新的分子见解。本研究不仅丰富了鱼类线粒体基因组数据库,也为非洲月鱼适应性进化和保护生物学的后续研究奠定了重要基础。

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