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补料分批培养设计器:用于对生长停滞补料分批培养过程进行建模和优化的用户友好型仪表板。

Fedbatchdesigner: A User-Friendly Dashboard for Modeling and Optimizing Growth-Arrested Fed-Batch Processes.

作者信息

Graf Andrea C, Libiseller-Egger Julian, Gotsmy Mathias, Zanghellini Jürgen

机构信息

Department of Analytical Chemistry, University of Vienna, Vienna 1090, Austria, EU.

Austrian Centre of Industrial Biotechnology GmbH, Vienna 1190, Austria, EU.

出版信息

ACS Synth Biol. 2025 Aug 15;14(8):3252-3257. doi: 10.1021/acssynbio.5c00357. Epub 2025 Jul 21.

Abstract

Optimizing fed-batch fermentation strategies is key to maximizing bioprocess efficiency. While mathematical modeling can aid process design, its complexity often limits accessibility for experimental scientists. We present FedBatchDesigner, a user-friendly web tool for optimizing fed-batch processes with a growth-arrested production stage. With minimal input requirements, FedBatchDesigner enables rapid exploration of a process's titer, rate, and yield (TRY) landscape for constant, linear, and exponential feeding strategies. Interactive visualizations allow users to assess trade-offs between productivity and titer, supporting rational decision-making without the need for extensive modeling expertise. We demonstrate FedBatchDesigner's utility via two case studies: synthesis of (i) l-valine with a microaerobic production stage in and (ii) ethanol under nitrogen starvation in . FedBatchDesigner is freely available at https://chemnettools.anc.univie.ac.at/FedBatchDesigner, with the source code provided at https://github.com/julibeg/FedBatchDesigner under the MIT license.

摘要

优化补料分批发酵策略是实现生物过程效率最大化的关键。虽然数学建模有助于工艺设计,但其复杂性常常限制了实验科学家对它的使用。我们展示了FedBatchDesigner,这是一个用户友好的网络工具,用于优化具有生长停滞生产阶段的补料分批工艺。凭借最低的输入要求,FedBatchDesigner能够针对恒定、线性和指数补料策略快速探索工艺的滴度、速率和产量(TRY)情况。交互式可视化功能允许用户评估生产率和滴度之间的权衡,支持合理决策,而无需广泛的建模专业知识。我们通过两个案例研究展示了FedBatchDesigner的实用性:(i)在微需氧生产阶段合成l-缬氨酸,以及(ii)在氮饥饿条件下合成乙醇。FedBatchDesigner可在https://chemnettools.anc.univie.ac.at/FedBatchDesigner免费获取,其源代码在https://github.com/julibeg/FedBatchDesigner上根据麻省理工学院许可提供。

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