Li Mengzhen, Kim Woonghee, Jin Han, Yang Hong, Kong Xiangtai, Song Xiya, Turkez Hasan, Bi Yuefeng, Pan Chengxue, Fu Ling, Liu Hongmin, Uhlen Mathias, Zhang Cheng, Mardinoglu Adil
Science for Life Laboratory, KTH - Royal Institute of Technology, Stockholm SE-17165, Sweden.
Central Laboratory, Tianjin Medical University General Hospital, Tianjin, China.
Comput Struct Biotechnol J. 2025 Jul 13;27:3066-3078. doi: 10.1016/j.csbj.2025.07.023. eCollection 2025.
Herbs are extensively utilized in Traditional Chinese Medicine (TCM) for lung and liver cancer treatment, but the mechanisms behind these herbs remain largely unknown. Here, high-throughput transcriptomic analysis technology was used to uncover molecular mechanisms of herbal treatment. Furthermore, we developed a compound recognition approach utilizing the LINCS L1000 database to identify potential treatment targets. Our results showed that among 14 herbs tested, exhibited the strongest anticancer effects in A549 and Huh7 cells, followed by , and . exerts its anticancer properties by downregulating cell cycle-related transcription factors, including E2F1 and TFDP1. Notably, the mechanisms of treatment differed between the two cell lines. In A549 cells, which possess wild-type p53, induced apoptosis through the regulation of the p53 pathway. In contrast, in Huh7 cells, which harbor mutant p53, the effect was mediated via the TNF-α/NF-κB signaling pathway. We also identified two drugs, AMG232 and Nutlin-3, that exhibited treatment effects similar to in A549 cells. Both drugs function as inhibitors of the MDM2-p53 interaction. Western blot analysis confirmed the alteration of the relevant proteins, aligning with our computational predictions. Furthermore, 23-hydroxybetulinic acid, a key active compound of , demonstrated the ability to inhibit the p53-MDM2 interaction by binding to the same pocket on the MDM2 protein.
草药在中医中被广泛用于肺癌和肝癌的治疗,但其背后的机制仍 largely 未知。在此,高通量转录组分析技术被用于揭示草药治疗的分子机制。此外,我们利用 LINCS L1000 数据库开发了一种化合物识别方法,以识别潜在的治疗靶点。我们的结果表明,在测试的 14 种草药中,[具体草药名称1]在 A549 和 Huh7 细胞中表现出最强的抗癌作用,其次是[具体草药名称2]和[具体草药名称3]。[具体草药名称1]通过下调包括 E2F1 和 TFDP1 在内的细胞周期相关转录因子发挥其抗癌特性。值得注意的是,[具体草药名称1]在两种细胞系中的治疗机制不同。在具有野生型 p53 的 A549 细胞中,[具体草药名称1]通过调节 p53 途径诱导细胞凋亡。相比之下,在携带突变型 p53 的 Huh7 细胞中,其作用是通过 TNF-α/NF-κB 信号通路介导的。我们还鉴定出两种药物,AMG232 和 Nutlin-3,它们在 A549 细胞中表现出与[具体草药名称1]相似的治疗效果。这两种药物均作为 MDM2-p53 相互作用的抑制剂发挥作用。蛋白质印迹分析证实了相关蛋白质的改变,与我们的计算预测一致。此外,[具体草药名称1]的关键活性化合物 23-羟基桦木酸显示出通过与 MDM2 蛋白上的相同口袋结合来抑制 p53-MDM2 相互作用的能力。