Qin Guoting, Chao Cecilia, Duong Shara, Smith Jennyffer, Lin Hong, Harrison Wendy W, Cai Chengzhi
College of Optometry, University of Houston, Houston, TX 77204, USA.
Mass Spectrometry Laboratory, Department of Chemistry, University of Houston, Houston, TX 77204, USA.
Proteomes. 2025 Jul 1;13(3):29. doi: 10.3390/proteomes13030029.
Type 2 diabetes mellitus (T2DM) is an epidemic chronic disease that affects millions of people worldwide. This study aims to explore the impact of T2DM on the tear proteome, specifically investigating whether alterations occur before the development of diabetic retinopathy.
Flush tear samples were collected from healthy subjects and subjects with preDM and T2DM. Tear proteins were processed and analyzed by mass spectrometry-based shotgun proteomics using a data-independent acquisition parallel acquisition serial fragmentation (diaPASEF) approach. Machine learning algorithms, including random forest, lasso regression, and support vector machine, and statistical tools were used to identify potential biomarkers.
Machine learning models identified 17 proteins with high importance in classification. Among these, five proteins (cystatin-S, S100-A11, submaxillary gland androgen-regulated protein 3B, immunoglobulin lambda variable 3-25, and lambda constant 3) exhibited differential abundance across these three groups. No correlations were identified between proteins and clinical assessments of the ocular surface. Notably, the 17 important proteins showed superior prediction accuracy in distinguishing all three groups (healthy, preDM, and T2DM) compared to the five proteins that were statistically significant.
Alterations in the tear proteome profile were observed in adults with preDM and T2DM before the clinical diagnosis of ocular abnormality, including retinopathy.
2型糖尿病(T2DM)是一种流行的慢性疾病,影响着全球数百万人。本研究旨在探讨T2DM对泪液蛋白质组的影响,特别研究在糖尿病视网膜病变发展之前是否发生改变。
从健康受试者、糖尿病前期受试者和T2DM受试者中收集冲洗后的泪液样本。使用基于数据非依赖采集的平行采集串联碎裂(diaPASEF)方法,通过基于质谱的鸟枪法蛋白质组学对泪液蛋白质进行处理和分析。使用包括随机森林、套索回归和支持向量机在内的机器学习算法以及统计工具来识别潜在的生物标志物。
机器学习模型识别出17种在分类中具有高度重要性的蛋白质。其中,5种蛋白质(胱抑素-S、S100-A11、颌下腺雄激素调节蛋白3B、免疫球蛋白λ可变区3-25和λ恒定区3)在这三组中表现出不同的丰度。未发现蛋白质与眼表临床评估之间存在相关性。值得注意的是,与具有统计学意义的5种蛋白质相比,这17种重要蛋白质在区分所有三组(健康、糖尿病前期和T2DM)方面表现出更高的预测准确性。
在糖尿病前期和T2DM成年人中,在包括视网膜病变在内的眼部异常临床诊断之前,观察到泪液蛋白质组谱的改变。