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通过感官、受体和序列数据探索苦味肽的分子空间

Exploring the Molecular Space of Bitter Peptides via Sensory, Receptor, and Sequence Data.

作者信息

Steuer Alexandra, Eckrich Laura Sophie, Schaefer Silvia, Mittermeier-Kleßinger Verena Karolin, Otterbach Alexander, Behrens Maik, Dawid Corinna, Di Pizio Antonella

机构信息

TUM Graduate School, TUM School of Life Sciences, Technical University of Munich, Alte Akademie 8, Freising 85354, Germany.

Leibniz Institute for Food Systems Biology at the Technical University of Munich, Freising 85354, Germany.

出版信息

J Agric Food Chem. 2025 Aug 6;73(31):19642-19651. doi: 10.1021/acs.jafc.5c01195. Epub 2025 Jul 23.

DOI:10.1021/acs.jafc.5c01195
PMID:40701541
Abstract

This study explores the chemical space of bitter peptides through a curated data set, named Bitter Peptide Space (BPS)-1000, which includes experimentally validated bitter and nonbitter peptides. The data set integrates sensory data, bitter taste thresholds (BTTs), and bitter taste receptor (TAS2R) activity when available. The inclusion of modified peptides further expands the data set's diversity. The HELM (Hierarchical Editing Language for Macromolecules) and BILN (Boehringer Ingelheim Line Notation) notations have been generated to provide a unique representation for both canonical and modified peptides. Through sequence-based and structure-based analyses, the study highlights the role of hydrophobicity, molecular size, and specific amino acid composition in the bitter and nonbitter sets in canonical and modified peptides, suggesting differences that could contribute to bitterness and enhancing the understanding of bitter peptide characteristics.

摘要

本研究通过一个精心策划的数据集——名为苦味肽空间(BPS)-1000,探索苦味肽的化学空间,该数据集包括经实验验证的苦味和非苦味肽。该数据集整合了感官数据、苦味阈值(BTT)以及可用时的苦味受体(TAS2R)活性。修饰肽的纳入进一步扩大了数据集的多样性。已经生成了HELM(大分子分层编辑语言)和BILN(勃林格殷格翰线性表示法)表示法,为标准肽和修饰肽提供独特的表示。通过基于序列和基于结构的分析,该研究突出了疏水性、分子大小和特定氨基酸组成在标准肽和修饰肽的苦味和非苦味组中的作用,表明这些差异可能导致苦味,并增强了对苦味肽特征的理解。

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本文引用的文献

1
Bitter peptide prediction using graph neural networks.使用图神经网络进行苦味肽预测。
J Cheminform. 2024 Oct 7;16(1):111. doi: 10.1186/s13321-024-00909-x.
2
The path to the G protein-coupled receptor structural landscape: Major milestones and future directions.通往G蛋白偶联受体结构全景之路:主要里程碑与未来方向。
Br J Pharmacol. 2024 Aug 29. doi: 10.1111/bph.17314.
3
Membrane-bound chemoreception of bitter bile acids and peptides is mediated by the same subset of bitter taste receptors.苦味胆汁酸和肽的膜结合化学感受是由相同的苦味味觉受体亚群介导的。
Cell Mol Life Sci. 2024 May 15;81(1):217. doi: 10.1007/s00018-024-05202-6.
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A bitter taste receptor activated in a surprising way.一种苦味受体以一种惊人的方式被激活。
Nature. 2024 Apr;628(8008):506-507. doi: 10.1038/d41586-024-00712-6.
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Enzymatic debittering of cheese flavoring and bitterness characterization of peptide mixture using sensory and peptidomics approach.采用感官和肽组学方法对奶酪调味料进行酶法脱苦及肽混合物苦味特性分析。
Food Chem. 2024 May 15;440:138229. doi: 10.1016/j.foodchem.2023.138229. Epub 2023 Dec 17.
6
Identification and prediction of milk-derived bitter taste peptides based on peptidomics technology and machine learning method.基于肽组学技术和机器学习方法鉴定和预测乳源苦味肽。
Food Chem. 2024 Feb 1;433:137288. doi: 10.1016/j.foodchem.2023.137288. Epub 2023 Sep 1.
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A comprehensive database of cheese-derived bitter peptides and correlation to their physical properties.奶酪源苦味肽的综合数据库及其与物理性质的相关性。
Crit Rev Food Sci Nutr. 2024;64(27):10105-10119. doi: 10.1080/10408398.2023.2220792. Epub 2023 Jun 28.
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Strategies for oral delivery of bioactive peptides with focus on debittering and masking.以脱苦和掩味为重点的生物活性肽口服递送策略。
NPJ Sci Food. 2023 May 26;7(1):22. doi: 10.1038/s41538-023-00198-y.
9
Bitter-RF: A random forest machine model for recognizing bitter peptides.苦味-RF:一种用于识别苦味肽的随机森林机器学习模型。
Front Med (Lausanne). 2023 Jan 26;10:1052923. doi: 10.3389/fmed.2023.1052923. eCollection 2023.
10
BILN: A Human-Readable Line Notation for Complex Peptides.BILN:一种用于复杂肽的可读行表示法。
J Chem Inf Model. 2022 Sep 12;62(17):3942-3947. doi: 10.1021/acs.jcim.2c00703. Epub 2022 Aug 19.