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基因组挖掘揭示了……中的一个杆菌肽生物合成基因簇。 (原文句末不完整)

Genome Mining Reveals a Sactipeptide Biosynthetic Cluster in .

作者信息

Elsakhawy Ola K, Abouelkhair Mohamed A

机构信息

Diagnostic Medicine and Pathobiology, Shreiber School of Veterinary Medicine, Rowan University, 201 Mullica Hill Road, Glassboro, NJ 08028, USA.

出版信息

Vet Sci. 2025 Jul 2;12(7):635. doi: 10.3390/vetsci12070635.

Abstract

, an opportunistic pathogen of veterinary and zoonotic concern, harbors diverse biosynthetic gene clusters (BGCs) that may contribute to its ecological fitness and virulence. In this study, we performed a comparative genomic analysis of 6815 isolates. Using Roary, we identified core and accessory genomes, revealing the subtilosin A gene () as part of the accessory genome, present in a subset of isolates from clinical ( = 657), environmental ( = 1031), and unclassified sources ( = 487). AntiSMASH v8.0.0 analysis confirmed the presence of subtilosin A BGCs annotated as a sactipeptide with low similarity confidence to ATCC 6633 subtilosin A cluster. Further characterization using BAGEL4 identified multiple genes homologous to the subtilosin A biosynthetic machinery (), although , , and were not annotated, raising questions about cluster completeness and functionality. BLAST v2.12.0 analysis of the full BGC identified by BAGEL4, revealing high conservation (99.6-100% pairwise identity) of gene content and order in 395 clinical, 593 environmental, and 417 unclassified isolates. Incomplete clusters were identified in 763 clinical, 942 environmental, and 201 unclassified isolates. The discrepancy between the number of isolates containing and those harboring the full cluster may reflect evolutionary divergence or could be attributed to limitations in assembly quality. The functional implications of the identified cluster in remain to be elucidated; however, its potential role in conferring competitive fitness by inhibiting closely related species is supported by previous findings in other staphylococci.

摘要

作为一种引起兽医和人畜共患病关注的机会致病菌,携带多种生物合成基因簇(BGCs),这些基因簇可能有助于其生态适应性和毒力。在本研究中,我们对6815株分离株进行了比较基因组分析。使用Roary,我们鉴定了核心基因组和辅助基因组,揭示枯草菌素A基因()作为辅助基因组的一部分,存在于来自临床(=657)、环境(=1031)和未分类来源(=487)的一部分分离株中。AntiSMASH v8.0.0分析证实存在枯草菌素A BGCs,注释为一种与ATCC 6633枯草菌素A簇相似度置信度较低的硫肽。使用BAGEL4进行的进一步表征鉴定了多个与枯草芽孢杆菌枯草菌素A生物合成机制()同源的基因,尽管、和未被注释,这引发了关于簇完整性和功能的问题。对BAGEL4鉴定的完整BGC进行BLAST v2.12.0分析,发现在395株临床、593株环境和417株未分类的分离株中,基因含量和顺序具有高度保守性(成对同一性为99.6 - 100%)。在763株临床、942株环境和201株未分类的分离株中鉴定出不完整的簇。含有和携带完整簇的分离株数量之间的差异可能反映了进化分歧,也可能归因于组装质量的限制。鉴定出的簇在中的功能意义仍有待阐明;然而,其通过抑制密切相关物种赋予竞争适应性的潜在作用得到了其他葡萄球菌先前研究结果的支持。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6371/12300986/a4ffcb016303/vetsci-12-00635-g001.jpg

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