Blin Kai, Shaw Simon, Vader Lisa, Szenei Judit, Reitz Zachary L, Augustijn Hannah E, Cediel-Becerra José D D, de Crécy-Lagard Valérie, Koetsier Robert A, Williams Sam E, Cruz-Morales Pablo, Wongwas Sopida, Segurado Luchsinger Alejandro E, Biermann Friederike, Korenskaia Aleksandra, Zdouc Mitja M, Meijer David, Terlouw Barbara R, van der Hooft Justin J J, Ziemert Nadine, Helfrich Eric J N, Masschelein Joleen, Corre Christophe, Chevrette Marc G, van Wezel Gilles P, Medema Marnix H, Weber Tilmann
The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, 2950 Kongens Lyngby, Denmark.
Department of Ecology, Evolution and Marine Biology, University of California, 1169 Biological Sciences II, Santa Barbara, CA 93106, United States.
Nucleic Acids Res. 2025 Jul 7;53(W1):W32-W38. doi: 10.1093/nar/gkaf334.
Microorganisms synthesize small bioactive compounds through their secondary or specialized metabolism. Those compounds play an important role in microbial interactions and soil health, but are also crucial for the development of pharmaceuticals or agrochemicals. Over the past decades, advancements in genome sequencing have enabled the identification of large numbers of biosynthetic gene clusters directly from microbial genomes. Since its inception in 2011, antiSMASH (https://antismash.secondarymetabolites.org/), has become the leading tool for detecting and characterizing these gene clusters in bacteria and fungi. This paper introduces version 8 of antiSMASH, which has increased the number of detectable cluster types from 81 to 101, and has improved analysis support for terpenoids and tailoring enzymes, as well as improvements in the analysis of modular enzymes like polyketide synthases and nonribosomal peptide synthetases. These modifications keep antiSMASH up-to-date with developments in the field and extend its overall predictive capabilities for natural product genome mining.
微生物通过其次级或特殊代谢合成小型生物活性化合物。这些化合物在微生物相互作用和土壤健康中发挥着重要作用,同时对于药物或农用化学品的开发也至关重要。在过去几十年中,基因组测序技术的进步使得能够直接从微生物基因组中鉴定出大量生物合成基因簇。自2011年问世以来,antiSMASH(https://antismash.secondarymetabolites.org/)已成为检测和表征细菌及真菌中这些基因簇的领先工具。本文介绍了antiSMASH的第8版,其可检测的簇类型数量已从81种增加到101种,并且改进了对萜类化合物和修饰酶的分析支持,同时在聚酮合酶和非核糖体肽合成酶等模块化酶的分析方面也有所改进。这些改进使antiSMASH能够跟上该领域的发展,并扩展了其在天然产物基因组挖掘方面的整体预测能力。