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干旱胁迫下玉米幼苗性状的机器学习分析

Machine Learning Analysis of Maize Seedling Traits Under Drought Stress.

作者信息

Zhang Lei, Zhang Fulai, Du Wentao, Hu Mengting, Hao Ying, Ding Shuqi, Tian Huijuan, Zhang Dan

机构信息

College of Agriculture, Tarim University, Alar 843300, China.

Key Laboratory of Genetic Improvement and Efficient Production for Specialty Crops in Arid Southern Xinjiang of Xinjiang Corps, College of Agronomy, Tarim University, Alar 843300, China.

出版信息

Biology (Basel). 2025 Jun 29;14(7):787. doi: 10.3390/biology14070787.

Abstract

The increasing concentration of greenhouse gases is amplifying the global risk of drought on crop productivity. This study sought to investigate the effects of drought on the growth of maize ( L.) seedlings. A total of 78 maize hybrids were employed in this study to replicate drought conditions through the potting method. The maize seedlings were subjected to a 10-day period of water breakage following a standard watering cycle until they reached the third leaf collar (V3) stage. Parameters including plant height, stem diameter, chlorophyll content, and root number were assessed. The eight phenotypic traits include the fresh and dry weights of both the aboveground and underground parts. Three machine learning methods-random forest (RF), K-nearest neighbor (KNN), and extreme gradient boosting (XGBoost)-were employed to systematically analyze the relevant traits of maize seedlings' drought tolerance and to assess their predictive performance in this regard. The findings indicated that plant height, aboveground weight, and chlorophyll content constituted the primary indices for phenotyping maize seedlings under drought conditions. The XGBoost model demonstrated optimal performance in the classification (AUC = 0.993) and regression (R = 0.863) tasks, establishing itself as the most effective prediction model. This study provides a foundation for the feasibility and reliability of screening drought-tolerant maize varieties and refining precision breeding strategies.

摘要

温室气体浓度的不断增加正在放大全球干旱对作物生产力的风险。本研究旨在调查干旱对玉米(L.)幼苗生长的影响。本研究共使用了78个玉米杂交种,通过盆栽法模拟干旱条件。在标准浇水周期后,让玉米幼苗经历10天的断水期,直至达到第三叶环(V3)阶段。评估了包括株高、茎粗、叶绿素含量和根数在内的参数。八个表型性状包括地上部分和地下部分的鲜重和干重。采用随机森林(RF)、K近邻(KNN)和极端梯度提升(XGBoost)三种机器学习方法,系统分析玉米幼苗耐旱性的相关性状,并评估它们在这方面的预测性能。研究结果表明,株高、地上部重量和叶绿素含量是干旱条件下玉米幼苗表型分析的主要指标。XGBoost模型在分类(AUC = 0.993)和回归(R = 0.863)任务中表现出最佳性能,成为最有效的预测模型。本研究为筛选耐旱玉米品种的可行性和可靠性以及完善精准育种策略奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d306/12292264/62301e1b6466/biology-14-00787-g0A1.jpg

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