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克服异基因CAR-NK疗法中的免疫障碍:从多重基因编辑到人工智能驱动的精准设计

Overcoming Immune Barriers in Allogeneic CAR-NK Therapy: From Multiplex Gene Editing to AI-Driven Precision Design.

作者信息

Kim Hyunyoung

机构信息

Division of Intractable Disease Research, Department of Chronic Convergence Research, Korea National Institute of Health, Cheongju 28160, Republic of Korea.

Korea National Stem Cell Bank, Cheongju 28160, Republic of Korea.

出版信息

Biomolecules. 2025 Jun 26;15(7):935. doi: 10.3390/biom15070935.

DOI:10.3390/biom15070935
PMID:40723807
Abstract

Chimeric antigen receptor (CAR)-engineered natural killer (NK) cells are a promising platform for off-the-shelf immunotherapy due to their safety advantages over CAR-T cells, including lower risk of graft-versus-host disease, cytokine release syndrome, and neurotoxicity. However, their persistence and efficacy are limited by immunological challenges such as host T-cell-mediated rejection, NK cell fratricide, and macrophage-mediated clearance. This review summarizes gene editing strategies to overcome these barriers, including β2-microglobulin (B2M) knockout and HLA-E overexpression to evade T and NK cell attacks, CD47 overexpression to inhibit phagocytosis, and TIGIT deletion to enhance cytotoxicity. In addition, we discuss functional enhancements such as IL-15 pathway activation, KIR modulation, and transcriptional reprogramming (e.g., FOXO1 knockout) to improve persistence and antitumor activity. We also highlight the role of induced pluripotent stem cell (iPSC)-derived NK platforms, enabling standardized, scalable, and multiplex gene-edited products. Finally, we explore artificial intelligence (AI) applications in immunogenomic profiling and predictive editing to tailor NK cell therapies to patient-specific HLA/KIR/SIRPα contexts. By integrating immune evasion, functional reinforcement, and computational design, we propose a unified roadmap for next-generation CAR-NK development, supporting durable and broadly applicable cell-based therapies.

摘要

嵌合抗原受体(CAR)工程化自然杀伤(NK)细胞是一种很有前景的现货型免疫治疗平台,因为它们相对于CAR-T细胞具有安全优势,包括移植物抗宿主病、细胞因子释放综合征和神经毒性的风险较低。然而,它们的持久性和疗效受到诸如宿主T细胞介导的排斥、NK细胞自相残杀和巨噬细胞介导的清除等免疫挑战的限制。本综述总结了克服这些障碍的基因编辑策略,包括敲除β2微球蛋白(B2M)和过表达HLA-E以逃避T细胞和NK细胞攻击、过表达CD47以抑制吞噬作用以及缺失TIGIT以增强细胞毒性。此外,我们还讨论了功能增强方法,如激活IL-15通路、调节杀伤细胞免疫球蛋白样受体(KIR)和转录重编程(如敲除FOXO1)以提高持久性和抗肿瘤活性。我们还强调了诱导多能干细胞(iPSC)衍生的NK平台的作用,该平台可实现标准化、可扩展和多重基因编辑产品。最后,我们探讨了人工智能(AI)在免疫基因组分析和预测编辑中的应用,以便根据患者特异性的HLA/KIR/SIRPα背景定制NK细胞疗法。通过整合免疫逃逸、功能强化和计算设计,我们为下一代CAR-NK细胞的开发提出了一个统一的路线图,以支持持久且广泛适用的细胞疗法。

相似文献

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Overcoming Immune Barriers in Allogeneic CAR-NK Therapy: From Multiplex Gene Editing to AI-Driven Precision Design.克服异基因CAR-NK疗法中的免疫障碍:从多重基因编辑到人工智能驱动的精准设计
Biomolecules. 2025 Jun 26;15(7):935. doi: 10.3390/biom15070935.
2
Allogeneic CAR-engineered cellular therapy for relapsed and refractory large B cell lymphoma: a systematic review and meta-analysis.异基因嵌合抗原受体工程化细胞疗法治疗复发难治性大B细胞淋巴瘤:一项系统评价和荟萃分析。
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Engineering allorejection-resistant CAR-NKT cells from hematopoietic stem cells for off-the-shelf cancer immunotherapy.从造血干细胞工程化制备异体反应性 CAR-NKT 细胞用于现货型癌症免疫治疗。
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Virus-free CRISPR knockin of a chimeric antigen receptor into KLRC1 generates potent GD2-specific natural killer cells.将嵌合抗原受体无病毒CRISPR敲入KLRC1可产生高效的GD2特异性自然杀伤细胞。
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本文引用的文献

1
Application and prospects of genetic engineering in CAR-NK cell therapy.基因工程在CAR-NK细胞疗法中的应用与前景
Front Immunol. 2025 May 23;16:1600411. doi: 10.3389/fimmu.2025.1600411. eCollection 2025.
2
Cell-based immunotherapies for solid tumors: advances, challenges, and future directions.实体瘤的细胞免疫疗法:进展、挑战与未来方向
Front Oncol. 2025 Apr 28;15:1551583. doi: 10.3389/fonc.2025.1551583. eCollection 2025.
3
Precision enhancement of CAR-NK cells through non-viral engineering and highly multiplexed base editing.
通过非病毒工程和高度多重碱基编辑提高CAR-NK细胞的精准度。
J Immunother Cancer. 2025 May 7;13(5):e009560. doi: 10.1136/jitc-2024-009560.
4
Enhancing the physiological characteristics of chimeric antigen receptor natural killer cells by synthetic biology.通过合成生物学增强嵌合抗原受体自然杀伤细胞的生理特性。
Front Immunol. 2025 Apr 17;16:1592121. doi: 10.3389/fimmu.2025.1592121. eCollection 2025.
5
State of the art in CAR-based therapy: In vivo CAR production as a revolution in cell-based cancer treatment.基于嵌合抗原受体(CAR)疗法的最新进展:体内CAR生成作为细胞癌症治疗的一场革命。
Cell Oncol (Dordr). 2025 Apr 22. doi: 10.1007/s13402-025-01056-7.
6
Advancing CAR T-cell Therapies with Artificial Intelligence: Opportunities and Challenges.利用人工智能推进嵌合抗原受体T细胞疗法:机遇与挑战
Blood Cancer Discov. 2025 May 5;6(3):159-162. doi: 10.1158/2643-3230.BCD-23-0240.
7
The clinical landscape of CAR NK cells.嵌合抗原受体自然杀伤细胞的临床概况。
Exp Hematol Oncol. 2025 Mar 27;14(1):46. doi: 10.1186/s40164-025-00633-8.
8
Memory-like NK cell differentiation, inhibitory NKG2A blockade, and improved recognition via antibody or CAR engineering combine to enhance NK cell attack against multiple myeloma.记忆样自然杀伤细胞分化、抑制性NKG2A阻断以及通过抗体或嵌合抗原受体(CAR)工程改善识别能力相结合,增强了自然杀伤细胞对多发性骨髓瘤的攻击。
J Immunol. 2025 Jan 1;214(1):1-11. doi: 10.1093/jimmun/vkae004.
9
Interim report on engineered NK cell trial in lung cancer refractory to immune checkpoint inhibitors.免疫检查点抑制剂难治性肺癌的工程化自然杀伤细胞试验中期报告。
JCI Insight. 2025 Feb 4;10(6):e186890. doi: 10.1172/jci.insight.186890.
10
Virus-free CRISPR knockin of a chimeric antigen receptor into KLRC1 generates potent GD2-specific natural killer cells.将嵌合抗原受体无病毒CRISPR敲入KLRC1可产生高效的GD2特异性自然杀伤细胞。
Mol Ther. 2025 Mar 5;33(3):1014-1030. doi: 10.1016/j.ymthe.2025.01.024. Epub 2025 Jan 14.