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三种腹足纲(软体动物门:腹足纲)线粒体基因组中的密码子使用偏好

Codon Usage Bias in Mitochondrial Genomes Across Three Species of (Mollusca: Gastropoda).

作者信息

Gu Jingjing, Zhou Xuan, Song Chao, Wang Yiyi, Jin Haobo, Lei Teng, Qi Xin

机构信息

Joint Laboratory of Xianju National Park & Taizhou University, Taizhou University, Taizhou 318000, China.

Managing Committee of Xianju National Park, Xianju 317300, China.

出版信息

Genes (Basel). 2025 Jun 26;16(7):747. doi: 10.3390/genes16070747.

Abstract

BACKGROUND

is a genus of false limpets belonging to the Gastropoda class. Only two species of this genus have been described with mitochondrial genomes. Moreover, the codon usage patterns and factors influencing them have not been studied. This study aims to expand the mitochondrial genome data of this genus and clarify the codon usage patterns.

METHODS

The complete mitochondrial genome of was sequenced using next-generation sequencing. The gene arrangement and phylogenetic status were compared with and . The codon usage bias of the three mitochondrial genomes was analyzed based on the relative synonymous codon usage (RSCU), the effective number of codons (ENC) plot, the parity rule 2 (PR2)-bias plot, and neutrality plot analyses.

RESULTS

The gene arrangement and maximum-likelihood phylogenetic tree support a close relationship between and . The codon usage bias analysis indicated that the codon usage bias of mitochondrial PCGs in the three species was primarily influenced by natural selection.

CONCLUSIONS

This study offers significant evolutionary insights into the phylogenetic relationships and molecular adaptation strategies among species.

摘要

背景

是属于腹足纲的假帽贝属。该属仅描述了两个有线粒体基因组的物种。此外,密码子使用模式及其影响因素尚未得到研究。本研究旨在扩展该属的线粒体基因组数据并阐明密码子使用模式。

方法

使用下一代测序对的完整线粒体基因组进行测序。将基因排列和系统发育地位与和进行比较。基于相对同义密码子使用(RSCU)、有效密码子数(ENC)图、奇偶规则2(PR2)偏差图和中性图分析,对三个线粒体基因组的密码子使用偏好进行分析。

结果

基因排列和最大似然系统发育树支持与之间的密切关系。密码子使用偏好分析表明,这三个物种线粒体蛋白质编码基因的密码子使用偏好主要受自然选择影响。

结论

本研究为物种间的系统发育关系和分子适应策略提供了重要的进化见解。

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