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利用牛津纳米孔测序技术对从患病西伯利亚鲟()中分离出的一种潜在新物种进行全基因组测序。

Whole-Genome Sequencing of a Potentially Novel Species Isolated from Diseased Siberian Sturgeon () Using Oxford Nanopore Sequencing.

作者信息

Mashzhan Akzhigit, Smekenov Izat, Bakiyev Serik, Utegenova Kalamkas, Samatkyzy Diana, Daniyarov Asset, Kairov Ulykbek, Sarbassov Dos, Bissenbaev Amangeldy

机构信息

Scientific Research Institute of Biology and Biotechnology Problems, Al-Farabi Kazakh National University, Almaty 050040, Kazakhstan.

Almaty Branch of the National Center for Biotechnology, Central Reference Laboratory, Zhahanger St. 14, Almaty 050054, Kazakhstan.

出版信息

Microorganisms. 2025 Jul 17;13(7):1680. doi: 10.3390/microorganisms13071680.

Abstract

spp. are opportunistic pathogens that are widely distributed in water sources, with several species being associated with fish and human diseases. We have previously identified an AB005 isolate from diseased . This isolate was identified as based on the 16S rRNA and gene sequences. However, this novel strain does not produce indole and tested negative for ornithine decarboxylase and d-xylose fermentation-differences that set it apart from typical strains. In the present study, this strain was subjected to whole-genome sequencing and compared with the genomes of the type strain ( ATCC 7966) and other spp. Comprehensive genome analysis suggests that AB005 represents a distinct species within the genus. The draft genome of the AB005 strain comprises 4,780,815 base pairs with a GC content of 61.2% and contains 6104 predicted protein-coding sequences along with numerous genes implicated in antibiotic resistance. The core/pan-genome analysis reveals extensive genetic diversity, indicative of a dynamic genomic structure. These findings collectively underscore the taxonomic distinction of the AB005 strain as a novel species and highlight its potential pathogenic implications in aquaculture and public health settings.

摘要

某些物种是机会致病菌,广泛分布于水源中,有几种物种与鱼类和人类疾病有关。我们之前从患病个体中鉴定出了AB005分离株。根据16S rRNA和(此处原文缺失相关基因名称)基因序列,该分离株被鉴定为(此处原文缺失相关物种名称)。然而,这种新菌株不产生吲哚,鸟氨酸脱羧酶和d -木糖发酵检测呈阴性,这些差异使其与典型的(此处原文缺失相关物种名称)菌株不同。在本研究中,对该菌株进行了全基因组测序,并与模式菌株(ATCC 7966)和其他(此处原文缺失相关物种名称)物种的基因组进行了比较。全面的基因组分析表明,AB005代表了该属内一个独特的物种。AB005菌株的基因组草图包含4,780,815个碱基对,GC含量为61.2%,包含6104个预测的蛋白质编码序列以及许多与抗生素抗性相关的基因。核心/泛基因组分析揭示了广泛的遗传多样性,表明基因组结构具有动态性。这些发现共同强调了AB005菌株作为一个新物种的分类学区别,并突出了其在水产养殖和公共卫生环境中的潜在致病意义。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1402/12300149/279e26bbdc29/microorganisms-13-01680-g001.jpg

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