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四他汀衍生肽与αvβ3和α5β1整合素相互作用的计算机模拟预测

In Silico Prediction of Tetrastatin-Derived Peptide Interactions with αvβ3 and α5β1 Integrins.

作者信息

Paturel Vivien, Baud Stéphanie, Schneider Christophe, Brassart-Pasco Sylvie

机构信息

Université de Reims Champagne-Ardenne, CNRS, MEDYC, F-51100 Reims, France.

Université de Reims Champagne-Ardenne, URCATech, P3M, F-51100 Reims, France.

出版信息

Pharmaceuticals (Basel). 2025 Jun 21;18(7):940. doi: 10.3390/ph18070940.

DOI:10.3390/ph18070940
PMID:40732230
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12298672/
Abstract

: Tetrastatin, the globular non collagenous (NC1) domain of the α4 chain of collagen IV, was previously demonstrated to inhibit melanoma progression. We identified the minimal active sequence (QKISRCQVCVKYS: QS-13) that reproduced the anti-tumor effects of whole Tetrastatin and demonstrated its anti-angiogenic activity mediated through αvβ3 and α5β1 binding. As QS-13 peptide was not fully soluble in aqueous solution, we designed new peptides with better water solubility. The present work aimed to investigate the interactions of ten QS-13-derived peptides, exhibiting improved hydro-solubility, with αvβ3 and α5β1 integrins. : Using bioinformatics tools such as GROMACS, VMD, and the Autodock4 suite, we investigated the ability of the substituted peptides to bind αvβ3 and α5β1 integrins in silico. : We demonstrated in silico that all substituted peptides were able to bind both integrins at the RGD-binding site and determined their theoretical binding energy. : The new soluble peptides should be able to compete with natural integrin ligands such as fibronectin, but also FGF1, FGF2, IGF1, and IGF2. Taken together, these findings suggest that the QS-13-derived peptides are reliable anti-angiogenic and anti-tumor agents.

摘要

四聚他汀是IV型胶原α4链的球状非胶原(NC1)结构域,先前已证明其可抑制黑色素瘤进展。我们鉴定出了能重现完整四聚他汀抗肿瘤作用的最小活性序列(QKISRCQVCVKYS:QS - 13),并证明了其通过与αvβ3和α5β1结合介导的抗血管生成活性。由于QS - 13肽在水溶液中不完全溶解,我们设计了水溶性更好的新肽。本研究旨在探究十种具有改善水溶性的QS - 13衍生肽与αvβ3和α5β1整合素的相互作用。:使用诸如GROMACS、VMD和Autodock4套件等生物信息学工具,我们在计算机模拟中研究了取代肽与αvβ3和α5β1整合素结合的能力。:我们在计算机模拟中证明,所有取代肽都能够在RGD结合位点与两种整合素结合,并确定了它们的理论结合能。:新的可溶性肽应该能够与天然整合素配体如纤连蛋白竞争,也能与FGF1、FGF2、IGF1和IGF2竞争。综上所述,这些发现表明QS - 13衍生肽是可靠的抗血管生成和抗肿瘤药物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7328/12298672/011427673e6b/pharmaceuticals-18-00940-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7328/12298672/0944884a3e38/pharmaceuticals-18-00940-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7328/12298672/f44f589fbc2c/pharmaceuticals-18-00940-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7328/12298672/a3f0beab5ca2/pharmaceuticals-18-00940-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7328/12298672/6ccfc33d68b3/pharmaceuticals-18-00940-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7328/12298672/011427673e6b/pharmaceuticals-18-00940-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7328/12298672/0944884a3e38/pharmaceuticals-18-00940-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7328/12298672/f44f589fbc2c/pharmaceuticals-18-00940-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7328/12298672/a3f0beab5ca2/pharmaceuticals-18-00940-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7328/12298672/6ccfc33d68b3/pharmaceuticals-18-00940-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7328/12298672/011427673e6b/pharmaceuticals-18-00940-g005.jpg

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本文引用的文献

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Interaction of integrin αβ and fibronectin under fluid shear forces: implications for tumor cell adhesion and migration.流体剪切力作用下整合素αβ与纤连蛋白的相互作用:对肿瘤细胞黏附和迁移的影响
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The heparin-binding domain of VEGF165 directly binds to integrin αvβ3 and VEGFR2/KDR D1: a potential mechanism of negative regulation of VEGF165 signaling by αvβ3.血管内皮生长因子165(VEGF165)的肝素结合结构域直接与整合素αvβ3和血管内皮生长因子受体2/激酶插入域受体(VEGFR2/KDR)的D1结构域结合:αvβ3对VEGF165信号进行负调控的一种潜在机制。
Front Cell Dev Biol. 2024 May 9;12:1347616. doi: 10.3389/fcell.2024.1347616. eCollection 2024.
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Ligand binding initiates single-molecule integrin conformational activation.
配体结合引发单分子整合素构象激活。
Cell. 2024 Jun 6;187(12):2990-3005.e17. doi: 10.1016/j.cell.2024.04.049. Epub 2024 May 20.
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Selective Suppression of Integrin-Ligand Binding by Single Molecular Tension Probes Mediates Directional Cell Migration.单分子张力探针选择性抑制整合素配体结合介导定向细胞迁移。
Adv Sci (Weinh). 2024 Apr;11(14):e2306497. doi: 10.1002/advs.202306497. Epub 2024 Feb 4.
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Anti-angiogenic collagen IV-derived peptide target engagement with αβ and αβ in ocular neovascularization models.抗血管生成的IV型胶原衍生肽在眼部新生血管模型中与αβ和αβ的靶点结合。
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