Sarpal Ritu, Bruce Ashley E E, Skromne Isaac
Department of Cell and Systems Biology, University of Toronto, Toronto, Ontario, Canada.
Department of Biology, University of Richmond, Richmond, Virginia, USA.
J Microbiol Biol Educ. 2025 Aug 21;26(2):e0010425. doi: 10.1128/jmbe.00104-25. Epub 2025 Jul 31.
Fate mapping is an essential technique in developmental biology that allows researchers to track the future identity or "fate" of embryonic cells in an organism. However, the experimental procedure for constructing fate maps is tedious, time-consuming, and technically challenging, making it difficult to incorporate as an undergraduate lab experience. Here, we describe a hands-on undergraduate laboratory activity that allows students to generate and examine model organisms' fate maps, employing a free, user-friendly web-based app, FatemapApp (http://fatemapapp.com/). Students used the app to construct the fate maps for the 32-cell stage frog embryo, the gastrula stage zebrafish embryo, and the 76-cell stage tunicate embryo. Individual analysis of the maps allows students to identify the potential of cells to contribute to one or multiple tissues and their probability of moving and mixing with the neighboring cells. Subsequently, cross-species comparative analysis allows students to infer tissue organization across chordate and vertebrate embryos that may be evolutionarily conserved. Surveys showed that the students found this activity engaging and valuable, reporting a deeper understanding of the rationale, methodology, and outcomes underlying the construction of fate maps. Furthermore, students reported increased comprehension of embryonic development and its processes.
命运图谱是发育生物学中的一项重要技术,它使研究人员能够追踪生物体中胚胎细胞的未来身份或“命运”。然而,构建命运图谱的实验过程繁琐、耗时且技术要求高,因此很难将其纳入本科实验室课程。在这里,我们描述了一项本科实践实验室活动,让学生使用一款免费、用户友好的基于网络的应用程序FatemapApp(http://fatemapapp.com/)来生成并研究模式生物的命运图谱。学生们使用该应用程序构建了32细胞期青蛙胚胎、原肠胚期斑马鱼胚胎和76细胞期被囊动物胚胎的命运图谱。对图谱的个体分析使学生能够确定细胞分化为一种或多种组织的潜力,以及它们与相邻细胞移动和混合的概率。随后,跨物种比较分析使学生能够推断出可能在进化上保守的脊索动物和脊椎动物胚胎的组织构成。调查显示,学生们认为这项活动很有趣且很有价值,他们表示对构建命运图谱的基本原理、方法和结果有了更深入的理解。此外,学生们还表示对胚胎发育及其过程的理解有所增强。