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该属的一个分类基因组学视角:从10个物种扩展到22个物种。

A taxogenomic view of the genus : an expansion from ten to twenty-two species.

作者信息

Silva M R, Paraíso F, Al-Oboudi J, Abegg M, Aires A, Barros K O, Brito P H, Jarzyna M, Sylvester K, Langdon Q K, Opulente D A, Carriconde F, Fell J W, Hofmann T A, Lachance M-A, Legras J-L, Libkind D, Pontes A, Gonçalves P, Rosa C A, Groenewald M, Hittinger C T, Sampaio J P

机构信息

UCIBIO, Departamento de Ciências da Vida, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516 Caparica, Portugal.

Associate Laboratory i4HB - Institute for Health and Bioeconomy, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516 Caparica, Portugal.

出版信息

Persoonia. 2025 Jun;54:265-283. doi: 10.3114/persoonia.2025.54.08. Epub 2025 May 23.


DOI:10.3114/persoonia.2025.54.08
PMID:40746710
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12308288/
Abstract

The yeast genus (subphylum , family ) is mostly known from its type species, , a frequent colonizer of wine and sourdough bread fermentations. The genus currently contains 10 species that are typically found in various natural terrestrial environments in temperate and tropical climates. Here we employ taxogenomic analyses to investigate a large collection of strains obtained in multiple surveys we carried out in Asia, Australasia, North America, South America, and Europe, and to which we added several strains maintained in culture collections. Our analyses detected twelve novel species that are formally described here, thereby more than doubling the species diversity of . We also sketch a genotype-phenotype map for the genus and show how the complex relationship between key genes and the physiological traits they control both between and within species. This remarkable increase in the number of species in the genus highlights how limited the current inventory of fungal taxa is. It also shows how integrated taxogenomic approaches can foster the assessment of species circumscriptions in fungi. Silva MR, Paraíso F, Al-Oboudi J, Abegg M, Aires A, Barros KO, Brito PH, Jarzyna M, Sylvester K, Langdon QK, Opulente DA, Carriconde F, Fell JW, Hofmann TA, Lachance M-A, Legras J-L, Libkind D, Pontes A, Gonçalves P, Rosa CA, Groenewald M, Hittinger CT, Sampaio JP (2025). A taxogenomic view of the genus : an expansion from ten to twenty-two species. : 265-283. doi: 10.3114/persoonia.2025.54.08.

摘要

酵母属(亚门 ,科 )主要因其模式种 而为人所知, 是葡萄酒和酸面团发酵过程中常见的定植菌。该属目前包含10个物种,通常存在于温带和热带气候的各种自然陆地环境中。在此,我们采用分类基因组学分析方法,研究了我们在亚洲、澳大拉西亚、北美洲、南美洲和欧洲进行的多次调查中获得的大量 菌株,并补充了保藏在菌种保藏库中的若干菌株。我们的分析检测到12个新物种,在此正式描述,从而使 的物种多样性增加了一倍多。我们还勾勒了该属的基因型-表型图谱,并展示了关键基因与其所控制的生理特征之间在种间和种内的复杂关系。该属物种数量的显著增加凸显了当前真菌分类单元清单的局限性。它还表明了综合分类基因组学方法如何能够促进真菌物种界定的评估。 席尔瓦MR、帕拉伊索F、阿尔-奥布迪J、阿贝格M、艾雷斯A、巴罗斯KO、布里托PH、雅尔齐纳M、西尔维斯特K、兰登QK、奥普伦特DA、卡里孔德F、费尔JW、霍夫曼TA、拉尚斯M-A、勒格拉斯J-L、利布金德D、庞特斯A、贡萨尔维斯P、罗萨CA、格罗内瓦尔德M、希廷格CT、桑帕约JP(2025年)。酵母属的分类基因组学视角:从10个物种扩展到22个物种。 :265 - 283。doi: 10.3114/persoonia.2025.54.08

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b7cd/12308288/b91c58551d19/per-2025-54-8-F4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b7cd/12308288/c02bf0515815/per-2025-54-8-F1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b7cd/12308288/6f6dbd4d0207/per-2025-54-8-F2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b7cd/12308288/5d013ff8e565/per-2025-54-8-F3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b7cd/12308288/b91c58551d19/per-2025-54-8-F4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b7cd/12308288/c02bf0515815/per-2025-54-8-F1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b7cd/12308288/6f6dbd4d0207/per-2025-54-8-F2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b7cd/12308288/5d013ff8e565/per-2025-54-8-F3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b7cd/12308288/b91c58551d19/per-2025-54-8-F4.jpg

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本文引用的文献

[1]
A genome-informed higher rank classification of the biotechnologically important fungal subphylum .

Stud Mycol. 2023-6

[2]
Taxogenomic analysis of a novel yeast species isolated from soil, Pichia galeolata sp. nov.

Yeast. 2023-12

[3]
sp. nov., a predacious yeast isolated from soil and rotten wood in an Amazonian rainforest biome.

Int J Syst Evol Microbiol. 2023-10

[4]
Schizosaccharomyces lindneri sp. nov., a fission yeast occurring in honey.

Yeast. 2023-7

[5]
Isolation, identification, and characterization of wild budding yeasts from rose flowers in Fukuyama city, Hiroshima, Japan, and their application in bread and wine production.

Mycoscience. 2021-11-20

[6]
sp. nov., a novel yeast species isolated from rotting wood.

Int J Syst Evol Microbiol. 2022-12

[7]
Using average nucleotide identity (ANI) to evaluate microsporidia species boundaries based on their genetic relatedness.

J Eukaryot Microbiol. 2023-3

[8]
A glimpse at an early stage of microbe domestication revealed in the variable genome of Torulaspora delbrueckii, an emergent industrial yeast.

Mol Ecol. 2023-5

[9]
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Yeast. 2022-1

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sp. nov., a yeast species isolated from soil in a Cerrado-Atlantic Rain Forest ecotone site in Brazil.

Int J Syst Evol Microbiol. 2021-11

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